Scaffold Ga0114980

Basic Information
Taxon OID	3300009152 Open in IMG/M
Scaffold ID	Ga0114980_10006521 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009152 Open in IMG/M

Scaffold ID

Ga0114980_10006521 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7693
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (76.19%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7693

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (76.19%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006891	Metagenome	362	Y
F009066	Metagenome	323	Y
F014487	Metagenome / Metatranscriptome	262	Y
F031026	Metagenome	183	N
F035218	Metagenome / Metatranscriptome	172	Y
F042872	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_100065211	F035218	AGGAG	MPLVKNPSNIDSFLFASGRMKMYRVGLAGSYTKVTGTGGVASIGNTGGFNINLNAGSAANGTSKAGYQDPTAAFMTASANKIDYSKRIRFSIGGMMYMGSTNSVIRMVFGGTGNATDAPLAGVDGLTIKGFGVEFALQSSVIQARLIGYNASYLTPTSYTTLTNGFGTTTSDNRFFGVVIESDGSGNINLYGAESSLNPNINIGQVPLLTLAGGPTNDTSTNRFGPEIHCSNSSSLPTASPSAILQSTHWLLDVQ*
Ga0114980_1000652114	F042872	AGGAG	VGSNPTPSDAYGCNDLRRNGNTAVTNQPQKKHYQQHSLLIRGGYEPEPAYHPNPSVARMWSAQR*
Ga0114980_100065212	F014487	GGA	MIPVIFAGLLLCSCSPRQDNNVLPQYSDMGAAEDAGKAK*
Ga0114980_100065214	F006891	AGG	MSTDQVAELAERLSLVRESIARIETRQGVIMDMLERSQASLGEYHGRLTSMERDAHTIKTRLWLVALVSGAVVSTAWELIKRRLGF*
Ga0114980_100065216	F031026	GGA	MPGGRIALLLIFSLALASCATTSQTQDGPPPSQDSISYFIYAWDKAERTNKPCPQAYRDLYAQALKALSDSLAETERERARNQ*
Ga0114980_100065218	F009066	GGAG	MMSPEHEKHLAGILRDLTRDLDSKYRIGQAEHGGALWRRPVWKDAWMECLDLCAYLHTLKMQLSVIGDLALRGASDETVAAAQSRESCRQILAVLEGFPSAEDKQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114980_10006521

Overview

Ecosystem & Geography

Associated Families

Sequences