Scaffold Ga0114980_10005254

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10005254
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8635
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (65.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048854	Metagenome	147	Y
F053996	Metagenome	140	Y
F057212	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_100052542	F057212	GGTGG	MTTIIATVGNNTASMTADRGITSDLIHPDMIKITQQDSWIIGVAGDARVCDQLQYLIEYPKPPQELLSQSQEHWYKWIVTTIIPMIDDTIKDSEMEAEALLITHGKAFLISENLSVISATPYWAIGSGAELALGSLAVSAYNPDWNKNHDLAGRRAMQVAGMHDPNTRGTLDQFISHHQGIVRRS*
Ga0114980_1000525420	F053996	AGGAG	MRTASEHLVQTTWMADHYLFKNHDTVTPIHWDKVFELLDNIEQPAFNNHELVLIAVLEFLCGSDMVEVSLDEIARLPELERNAVVEALRMKYSKVELQENL*
Ga0114980_1000525421	F048854	GGAG	MADEAKENKENMIALRLNNEQMMAVRQWANQHNTNISTVIRSALELMTGAKQ*