Scaffold Ga0114980

Basic Information
Taxon OID	3300009152 Open in IMG/M
Scaffold ID	Ga0114980_10004723 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009152 Open in IMG/M

Scaffold ID

Ga0114980_10004723 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9146
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (10.53%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

9146

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (10.53%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001981	Metagenome / Metatranscriptome	608	N
F003660	Metagenome / Metatranscriptome	474	Y
F005845	Metagenome / Metatranscriptome	388	Y
F010395	Metagenome / Metatranscriptome	304	N
F025271	Metagenome / Metatranscriptome	202	N
F035673	Metagenome / Metatranscriptome	171	Y
F038589	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000472312	F025271	GAG	MTPEYTLQAACVKLFKLLRPHEEGRLFLNLNNPRSRTNGHFLKGIGLTAGVADMTYLSDKGAIFLEFKANKGKQSLSQKWWQGVVQEAGYRYEVIRSIEDFQRVVASVE*
Ga0114980_1000472313	F005845	N/A	MKTTPTDFRRWQLHIRKECVNCNRPDKSETIKPWSVNWTLLGQILQAKNA*
Ga0114980_1000472316	F035673	N/A	MVLRFALCEAEAVFVHDLLRVLAWGCLDPADLPMVLGPNPWPRLICHRNNYSGMDLQMTNDQFVVAQKHRKYWDQYLASLTMRLPPDAVGELQAILTAHGRPPTNWWCADCVKSALQYIYLQADLFLEVNQNTVTIPLSNAPANPEQ*
Ga0114980_100047232	F010395	N/A	MPEYHSLRPAKALTNALERLMIAVENADLEGNHALLLEYRKACELLGYDPAMAQWQGTKEVHLSSGPNVADPVTVSYFHALNPEE*
Ga0114980_100047234	F003660	N/A	MKHETQAKLKAALATGYILLTACLGIAFFGRFIFALITN*
Ga0114980_100047236	F038589	N/A	MNLLEQMNASEYKKLLEYKEQYPTLGEGLIKALTEKTVVIHLTFDECIYLCQALEFPWAGLFNQIFDTFKSKP*
Ga0114980_100047237	F001981	N/A	MTYPTLITIPKADICKAEIAQIAQQLTDRINDGEVNPVEAHIKLKAIVKALEATIKATEQTVADEASKHGKTFQAFGAEITLKEGSLTPNYEEDEVYADLKAQMKAREELLKIAFRQAGKTAIFDESTGEQVPVCTAKATKASIAVSFK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114980_10004723

Overview

Ecosystem & Geography

Associated Families

Sequences