Scaffold Ga0114980_10003282

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10003282
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11139
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (62.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F002044	Metagenome / Metatranscriptome	599	Y
F002162	Metagenome / Metatranscriptome	588	Y
F007469	Metagenome / Metatranscriptome	350	Y
F020681	Metagenome / Metatranscriptome	222	Y
F105165	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000328215	F002044	N/A	MANTRKPIKRKKINRRVVRHSPEPLSKIDQHYMALHECYKAARKAGFTPEHAFWLMTEHKTFPDWIVGDGGIIPSIDPTDDEEND*
Ga0114980_1000328217	F105165	AGG	MYAQIACVYVGSDMTAKTDMLQLAWILLGLGTITWIIHEIKETAFQNGYWKGREAGWQSHRRLINTKVQSDEVFDYDKN*
Ga0114980_1000328220	F007469	AGGAGG	MGYVEIIDGSGLMATIENDAIKVEPTTIVCDMCNDDRLLHEGDLFQCYSCHAINRIP*
Ga0114980_1000328221	F002162	GGA	MPNYEYECDREGLSIILDLPMGHKIPLCQVCGFELNRVYTAIPAIFKGSGWAGKR*
Ga0114980_1000328222	F020681	AGG	MKFKCNGCSRKTEFIWLDQFNTAEGFRVYQCKDCGCVGTKNLAEATDTQEPVIRCTKCGSWQFVDQVCHTCELIATKEQA*
Ga0114980_100032828	F000468	AGAAG	MTQFTPDWKLTVSGTEYTDITISDITHASGRSDIYSQPNPSFIQITLVALSGQTLPFDLNDSLALEVKNTSGTYIPLFGGNITDVTAEVGATGSIATVVNYTLIAMGNLASLAKIITNGILSQDEDGDQIYDLLSSVLLGTWNDVPAASTWSGYSATETWLQAVNLGLGEIDQPGLYVMENRDSSPDTIYNIASYIANSAFGYLYEDNQGNIGYADADHRQTYLLDNGYTEISANHALAQGIRASIRSGDIRNDIYINYGNNFGSQKTATDLTSIATYGYKGETIQSLIHSATDAQEIADKYITLRAYPYPSFDSITFPITNPEMDDADRDALLGIFMGQPIHITNLPSQIQNGSFEGYVEGWSWSTGFNELFLTINLSPVNFSQVAMRWNTVPVGEAWNTISATIDWANANIIA*