NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114980_10003265

Scaffold Ga0114980_10003265


Overview

Basic Information
Taxon OID3300009152 Open in IMG/M
Scaffold IDGa0114980_10003265 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11167
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (78.26%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000141Metagenome / Metatranscriptome1941Y
F000506Metagenome / Metatranscriptome1070Y
F002135Metagenome / Metatranscriptome590Y
F007522Metagenome / Metatranscriptome349Y
F019825Metagenome / Metatranscriptome227N

Sequences

Protein IDFamilyRBSSequence
Ga0114980_1000326514F002135GAGMANTRKRKKINRRVVRKSPDPLSKLEVFYIAKHEMFKAARKAGFSEPIALALMDSPSSMPDWVVGDNGIIPSIPTPEEDDD*
Ga0114980_1000326517F007522N/AMTLKEAGLLWVASMVGIIYAYGLIQNAKTTHYWRGRKDGWDMHRRMIENKTNADNN*
Ga0114980_1000326520F019825AGGGGGMGYIEILRGGPYLERIENDQVKFIPSNDVCIACNDDRLIHSGNYLICTQCHTRQ*
Ga0114980_1000326521F000141AGGAMHPQFKCNGCKAKTEFLWLEQLDTPEGFKAYQCMSCGCVGVKNIAEALHIPDSSIDRCIKCGGWQFLGSGCHTCALIGAK*
Ga0114980_100032655F000506AGGAGMAKLKITRANGEVSEHKITPGVEYAFELKWSNGISKMLREHEQQTHIFWLAWECLRRANITVPIFGTEFIDTLDTVEVLEDEKK*
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