Scaffold Ga0114980_10002879

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10002879
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11968
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F002060	Metagenome / Metatranscriptome	597	Y
F008814	Metagenome / Metatranscriptome	327	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000287911	F000473	N/A	MYIDKSKDHFKYGINQWNGEPNKPVFYTQEMAKALRGISKPVNNLQMDVVKYPEFLALRLYEDNFIQFEGTKKEMVIEYVSKVKKLIESYGVRCELEGVPSERVLR*
Ga0114980_1000287913	F000671	AGGAGG	MDKVLCYSCNKTKNKLSLKKSVLVPINLLMCETCTISKFEPRWLIILAGRQLGSESVKDFVLKKRYVGTEITASELLI*
Ga0114980_1000287914	F002060	N/A	MNLDLTTIIIAISAAILSGMGTAIIAGLNENKREKNRQKEREQDLLKIELKDLKIELYQLEKELTEWKDKYYKTIEELILIKSELENALRDLNSLDDHIN*
Ga0114980_1000287919	F008814	GGA	MANMTVLEEIIKEIGEELYQKWYNGLAIEDRTEESSKAMATNAGETAVWVIQTFMNKFNAAADELKDT*