Scaffold Ga0114980_10002877

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10002877
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11972
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012001	Metagenome / Metatranscriptome	284	Y
F023330	Metagenome	210	Y
F029018	Metagenome / Metatranscriptome	189	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_100028772	F023330	AGGTGG	MNQESKDIRDLLHPTDYSKSIDLRGESIGTQCICGCEVFIALISFDELKEISFYFLDGECANCGSMVTLPYPDDYVMENDCDS*
Ga0114980_1000287723	F029018	N/A	YGRKLYSAMSLHRVRVHPEFVEECFGCKVSTLELNTGDANARASMPKRKWEGELARYKQARSQGIQPAGTTMDKIIAAEKASENLGRAYNAEKDPNAKSIDKKTANVINEVKKAGL*
Ga0114980_100028776	F012001	GAG	MNKNKLKAIGLTYFRAAAASVIALYLAGQTDPKVLGSAFIAGLAGPILKALDSSATEFGKNAK*