NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114980_10002788

Scaffold Ga0114980_10002788


Overview

Basic Information
Taxon OID3300009152 Open in IMG/M
Scaffold IDGa0114980_10002788 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12187
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (67.57%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000441Metagenome / Metatranscriptome1136Y
F000852Metagenome / Metatranscriptome860Y
F001280Metagenome / Metatranscriptome732Y
F001781Metagenome / Metatranscriptome635Y
F007921Metagenome / Metatranscriptome342Y
F021988Metagenome / Metatranscriptome216Y

Sequences

Protein IDFamilyRBSSequence
Ga0114980_1000278815F007921N/AMINWLVNRIFRWDSLRHAIFDEVRLYQSIDRSMWEHEKEGPTNLTWSEGDRWYGWTYNTNSKRYYFDDIGNESLMGLWEDQWLMESDSLEKSIVNG*
Ga0114980_100027882F001781GGAGMKPADKDKLNECLKILDTTDLGLSLVWLWTWSTINNIFEDETYTQNCTIDEMWDHLCEAVEAGQGFSLEYGAEQHQDDVLDWMMSRDYIVDTMFEEDEEDKDEDE*
Ga0114980_1000278829F021988N/AMSNFQKEDGTGTTPPPSGAAAGAVTSNSATRKQPRQGLKTDINRHGIRRELNTNPRPPKKTGRKKI*
Ga0114980_100027883F000441GAGGMKMSDEYIDEILNRAQKLLWGGSETENIEAHNLISNLIRERVEQTDLT*
Ga0114980_1000278830F001280GAGMCVECGCESVGSQTGIIPVTITDASRDGNSGLTLSMSSTPEQTRQFINE*
Ga0114980_100027884F000852GGAMTTKREYLKQQGITVGVRGRFSGAAKVVLDQAIAKGVTFTAEVPVKKAK*
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