NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114980_10001963

Scaffold Ga0114980_10001963


Overview

Basic Information
Taxon OID3300009152 Open in IMG/M
Scaffold IDGa0114980_10001963 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14715
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (73.08%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000141Metagenome / Metatranscriptome1941Y
F002135Metagenome / Metatranscriptome590Y
F007522Metagenome / Metatranscriptome349Y
F015995Metagenome250Y
F019825Metagenome / Metatranscriptome227N
F025013Metagenome / Metatranscriptome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0114980_1000196311F007522AGGMDLKEAGLLWVACMVAIIVLYGMYENAKTVAYWRGRHDGWTMHRRMIENKIDANDN*
Ga0114980_1000196313F002135N/AMANTRKRKKVNRRVVRKSPDPLSKLEVFYIAKHEMYKAARKAGFSEPLALALMDSPSSMPDWVVGEDGIIPSIPTPEEDDD*
Ga0114980_1000196317F025013GGAGMNNVTFIEIEDSASGEVKTHAIIDRGNGEYTSMLKSTYDEMIAQQELAAE*
Ga0114980_1000196321F015995AGGAGMPVEVVGVKDVLKGLEFIDEDMRQRIRTAIDPLMRGVAFKAKGFVKGNDDVLSGWAKASGNPGTFPKYDAGVVRAGIGYNPGENKTFRNGFKVSNYVYNASRPGAIYEVAGRLNPQGRAPFQMTSSQGASGTYTKKSARSRALQQYNSSNPFASQQFVAALEPVTSQPKIKDIRAGGRKTKGRLIYKAWAEDSTKVYDAILKAINATAIDFNKKTEIKKAA*
Ga0114980_100019637F000141AGGAMYPQFKCNGCKAKTEFLWLEQIDTPEGFKAYQCMSCGCVGIKNIAEALHIPDSDICRCSKCGGWKFLTVDCHTCQLIGAN*
Ga0114980_100019638F019825AGGGGGMGYVEIYRGGPYLERMENDQVKFLPSTDLCIACNDDRLIHSGNYLICTQCQCRQ*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.