Scaffold Ga0114980

Basic Information
Taxon OID	3300009152 Open in IMG/M
Scaffold ID	Ga0114980_10001943 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009152 Open in IMG/M

Scaffold ID

Ga0114980_10001943 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14786
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (12.90%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

14786

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (12.90%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F003038	Metagenome / Metatranscriptome	511	Y
F012010	Metagenome / Metatranscriptome	284	Y
F053077	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000194325	F012010	N/A	MQDIYTRLIKENLTPNAFYVLHCIKENIIPDKFVNKELEVARLKSAKWLNEDLTLSNKSITFTDEINSFFKKTKKKVSKDLMGEDFLQKIQEYVEIFPNRKLSSGKYARVNPKNLETSFRWFFETYNYNWDMIITATEKYVDEYSIRNYEYMRTAQYFLRKQTLDKAFDSELATYCDLINSGDNDPQVYFKENIV*
Ga0114980_100019433	F053077	N/A	MLYQLNNGKVIYLSIEQFLELTDEDVQYLMALDAGEYATNPFTDSAVLENTKEKYYDFDYLPDDDFENNVVSDDEPFDDIIDLSAPTDS*
Ga0114980_1000194330	F003038	N/A	MALSTTDLAAAGGSGMMKTIAPGNHVLKINSIQLDDYSFIKDAKHLILNLETEPIEGFEGFLIDKDDESKGRFAGQIGRVKASQYAFADGETKSGIKIQRDRSIMIFLKNLCNTLELNEWFTAQDNKHDTIEDFVTAFNVSAPFQGVFVEFCIAGKEYVAKTGYTNYDMYLPKADKGKYAFAQYDEGKVIIYDEAIHLKKTEVKEVQAFGDSDDTFSVPKRSSSDFSLD*
Ga0114980_100019435	F000716	N/A	MEKLKENVKNYQLNASTKTTQYLSDGYSQYQNYLYKRALYGLDSLDEKELVTMCSKKRQRIVNVYKKAQIIVNKLKQEITIQQSNFIFKTLFPNSPITEFLLSETETDEKFKNTLTFKDLNISKDQIISIFMAEGVLPKNFLSLEGPQNQLPRLKNEYKA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114980_10001943

Overview

Ecosystem & Geography

Associated Families

Sequences