Scaffold Ga0114980_10001855

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10001855
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15059
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (60.87%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001326	Metagenome / Metatranscriptome	721	Y
F003964	Metagenome	459	Y
F006139	Metagenome / Metatranscriptome	380	Y
F009743	Metagenome / Metatranscriptome	313	N
F053986	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000185510	F006139	N/A	MAPQILVAFIGGGFAVVVALISKMGHDNKKDHGQVHQTLGRIEQKIDGHIENHR*
Ga0114980_1000185516	F003964	GGAG	MMSGVNTTIEIAGLKDALKTLNKIDKKLRIEITKDYRSIVKPVITDANSLIPSGVPLSGMARNWTTKSGFQMLPWQPGHKQKIAAKINTRAIREYAGRTTNVGTFSIVYQSATGTMFDMSSQGRLGAALTARYGSRSRVMWKAWQQNESTVNAEMEQLVKRIMDLTNRELA*
Ga0114980_1000185517	F009743	AGGAG	MKIKLQLKRSADATPEHYWTNLFVITEWERLERRNIQQLSSQPLYSDYCCWMHTILKLKGEQVGDTWRDWISKNPDIEILPVLDETDTNPTDAAPTVAS*
Ga0114980_1000185520	F001326	GGAG	MATYTVTNKYLIDNFAVLQLLTPSEIAVGSSIVVASVDATFNGSYVVRALPQYLFIGVDTQGDLLYDYQVPIADQVLYAKTASDVERVAASGTVAYNPAPTWITTAQLITYLGVSITNPSDDYTLATQATNAANDFCWRRRQEAGYTGDLLASSPGHDVSLGTAMYAAALWRSRGSVESMYATFDGMGSATQQSLTPIVKQLLGIPRPAVA*
Ga0114980_100018556	F053986	GGGGG	MSEGVAWNQGELSEETRALILEAGNIKHQMAMFSLLDEIARPSHAPKKYREDHLIRGLRNMRIDFQLSGNDGYAECVTLAIEELGGQVKPD*