Scaffold Ga0114980_10001830

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10001830
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15165
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (94.59%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F015330	Metagenome / Metatranscriptome	255	Y
F020513	Metagenome	223	Y
F034802	Metagenome	173	Y
F074585	Metagenome	119	Y
F078405	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_100018301	F020513	AGGA	MLDKQNIIVESLESPPANKGLEYQVAHEAYLKMVDYLRLTQAKNTLNRLSDYHYLNIPVSNSTEPIRGIDYISPVVSPGIDYSTDVITKCLMPDGKVNFEFERISEADAIASQQAEKMVTYFINSKNDSYQIIRDLAQDSLLHKNGVVMISPIREPITQYKEVEGTRDNLRSFEIMAAEKGLVAKRQQMRRIDVDLQGVAQETMMPDEQGQEPTADDMQEAIRNNTIYRAKYKLTGFSTNIRIKHVAQHYFVCNPTIPGIQNQDFCGFYMPMTIHEAKSQYPYIDLEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVVMLTTAWLRKDVDNDGEEEIVEVCYSGSYVLYIKEVDFIPMASMCPKPIVGNFFGYSQAERLVPLQEYKTAINRAEIAFALQASTPRMGVNPEFIDAEEIQRGVSALFILDRKFDPAKHVFEFQPLQGNLAYIQDSMERFEKDNNRMLGMTSAADTLNPEVMKDGNSGYKLQLAMGPNQIIQDAMVKNCAIGLRDIIYIVWKTMIQ
Ga0114980_1000183010	F001915	AGGA	MEWSLADPRFDVDDIVEMADSFFGHEADGIVTRSRAVFRHRVTVACTEQLFNKSREFIAVCRDEPKTLPMYDMNGMVMGSHSVQPLLGFCWFDRGGYTTYSNEEISNAKFHHLDLSLSVRNRVRLVNEMIDQHILWAHTWGVPIVCSTSIRSEHDGFMRIHAKRGFTVNGSYAWIRTEKGMECLTKK*
Ga0114980_1000183014	F078405	AGG	MRQYEFEISNRRTKRIEHARATARTAAIARAQIVLMYGAQFDVMTLCSDINPPHHTLGEIDCSGFIETESAWLFDQANQIEKDKTCKTA*
Ga0114980_1000183015	F074585	AGG	MKTQKEVRAAFWATFPNLSKKRHRYSWNQNDKTAELVYSIDTRCAFVDFVDQLQSDGEISEALANRVTL*
Ga0114980_1000183028	F034802	AGGA	MTKSQAHELLDRQREQRNVTALPSAIDHALFLTGDLGGNALVFSEGMDSTIQQEDQGSWQSKGHDVVAGTGRYYGSEEWFRANHGPKAEDE*
Ga0114980_100018304	F001059	AGGA	MATYDIEALKADLPTAKDLAQFVYDKTQIALDLVGKSKDDQYQVAKNALEGKKIPSEFVTEENPYVDKKDLIPVDELKVLPPRNKDLPEPDTQVHYFGATNMPHPLDPQSDKKVAIDFRKYENGLITYQVVAPVEQIAVGSRINKYGQTVPEKYTWLDPRTEELLMRRADGTFTERGRGLYTYLIGEKGGGVWTLIDRDMVSVSAKNIADPWA*
Ga0114980_100018309	F015330	AGGA	MSDEKVVELKTKNAVGRPKSVVNRVTEYGALFNQLNAAHIAKGLPPLKTAMEVLIEAMQSDELDIKDKARIADKLAPFESSRAPVISIEHVQNIVREEEVSADDAMDDFLDSLRKV*