Scaffold Ga0114980_10001491

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10001491
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16828
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (60.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F008812	Metagenome / Metatranscriptome	327	Y
F012108	Metagenome / Metatranscriptome	283	Y
F035281	Metagenome / Metatranscriptome	172	Y
F057320	Metagenome / Metatranscriptome	136	Y
F061803	Metagenome / Metatranscriptome	131	Y
F086678	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_100014912	F012108	GGA	MIKVEMSVREALNMVSNGCNLDMFEKIVCALEVALGVNQRRMVTITGGLTLDNRIHSIKAIRLHTGWGLKEAKDWTDYLVGGWHYDKFVPAKSGAKQSITLKTPEAAEALLRDLVGLGCEGFLS*
Ga0114980_1000149124	F061803	AGGAG	MEVELSKQEAWKILDAISAYKEDYTVTGAVSKTYDNITKKLKEVVKE*
Ga0114980_1000149127	F035281	AGGAG	MKNVILMIALATVCSTGYAGECANGSCSLRSRAVNVTREIVAVPVAVTRRTVEATRNVGRRTVARVRSVVR*
Ga0114980_100014913	F006543	GGAG	MKKFSFVIDVVADELDRDSVVDSIRDCLSGSLPGDVHANVKAGEVKAFSEQGYKVWRARVTGVTAEQAGDAHDGKVEKETAEVVA*
Ga0114980_100014916	F000325	AGGAG	MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARTAGFANVITEKNKIRAMILEAKRREKSIRWHERGDWFLNGELDLDYVANVTWACESILADGDSLPDMWFYTHIYDSRLVSLEKYMNVYASVHDDNDMGEALAQGFKLFAWCDSDMKIAPKRPKSKAKAEAWRQALPKLVVLNATKFVVCPEIRRGRSEITCTGTKDSISCDLCVRGLANVLFPAH*
Ga0114980_100014917	F057320	N/A	LKGIIMSYVGLYDDAGSKNAFYIIKDKKIGRKRVGFKEFESEKEAKFAHRVQKHLAQFDLAPMVYGDVGMIRRHDGELTAHGYLTEVARPMPECHDDEYCDGECFQSECKNGQMIQFVVDKLDSMGLSYNDAHKGNFGYIRRKGKWVAVVIDLGIESFTEWDEDIYGQFDYDADEDVDCYGVCNCVHCQKVRQNLQD*
Ga0114980_100014918	F086678	AGGA	MSKYYIKSGTLELIYSCNKCPRDAAMDAIWETNENDTLDEFIYLDERGYKNYTNADGLTCVLHTSHILKDAGWSIE*
Ga0114980_100014919	F008812	GAGG	MIQWVGILIAVLGLAYNGVKDYQKGDIKLSRLPQKQVLTKPVYPVQYCLMAYDPNVNKVFYLHENGQWHDYAPQQRRYEATPQPYQDQGKTAVASSYGSQGTPSHRYGQSPQANPNPIR*