Scaffold Ga0114980_10001147

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10001147
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19043
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (20.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001732	Metagenome / Metatranscriptome	644	Y
F003904	Metagenome / Metatranscriptome	462	Y
F008080	Metagenome / Metatranscriptome	339	Y
F028094	Metagenome / Metatranscriptome	192	N
F038674	Metagenome / Metatranscriptome	165	Y
F069711	Metagenome / Metatranscriptome	123	N
F080979	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000114710	F001732	GGA	MKRLLILFMGLLLSGCFSTIKPAKQIDDNQKAIAKEEKKVDATVVEIEKNDKGKKIQTSALAQGIQYSLNQVTNPPIQVDTAKSLNERVVSIVGSPHIDEINRIKATVDLLNSAVEEERKKGLELLAKRDELINKLQKEKVELNEQYDDQLWQLTDKAKEVAKEADQNKAVLDSMSGMFGLNAVFWGLKKFVFSALTAILIFTVVFVILRLLATVHPAAGAAFSIFNMLGSSVISVVKMLTPKAFEMSNFATKENVEEFKSPLVKIVDVIQELKEKQKESPDRVYPLSEILKRFDKEMDSHEKDLIEEILKEQKWIK*
Ga0114980_1000114712	F003904	N/A	MNNLVLNIKKYLFFALLPTGIIVILAISSLKDIEQGYARFRFGRDITLYLRKSTDQLTYLGAAYTATSDKKFLDQFNSHLKEREKYFNEEIVINKMLTQEELKEFRKGLDISNDLAKDVENAAFEKMDNKAFFGDKYLDYKKKIYDNINSFRGLINDSSEKIIKDEAKLLNIYLYCLAGIVLALVYLIKQESFTPTKNKPIKKKPIKKKKQ*
Ga0114980_1000114718	F080979	N/A	MQDHKPINMKKISAKEEKNYKLLKEGQDFLVGDLIHLVDDEYVKLNEHNRLLKEKVNKYNKVLRKL*
Ga0114980_1000114719	F069711	N/A	MKFTPEQRELIKETRNKINKIQVEQSELYANLLDKLNLSERSEDWIFDYIFNQYGTIKNIESKSSKKS*
Ga0114980_100011472	F038674	N/A	MDRKSFFKTLFGGFVAASTVSLAKAEETPQSAKDLSLSREVLRIDENGDLGIGGSGNVGLGTSTPRTKLHVEGIVFHVNDRMLEMAGDENGDFKIRWLDPKENETVNTIVIHKPKDDPWKREFVKIG*
Ga0114980_1000114721	F028094	AGGAG	MSQQLQFDFRSPEEIAKQRKISEENEKVLNDMFSNDDYVYNRYVDFLLDLIPFRWGWRAKNWPRAIKWWAKCKYQKIRYGVSDDDVYSLGYNIALFVLPRLKYFKKKGKTGIPCCFLPDNFHLLKDEEQTAAEEKGVKEMGDALDEMIFAFEYIIDGDKFCELPESLSFKAKDLDFNSEKSIEEKESWKQYMEKANELNDRKNNGLILFAKYYDTLWI*
Ga0114980_100011473	F008080	N/A	MLKIQIWMRGTMEYSQDTIPGPTIDQTQEQFEEAFKESDDCYWGGDVYETCPYFDNDKRDSIDVYLGGDDNISNDEKPVFVTSNWEDFEFEKGGRSNYVPEAPDKLGEVNIWWSHDMKFNYVYFWNNFTEFDPNKLKIQYGVDQKGNKYLEDLIYDGEFPDDYNDFGDTGYGYNGPEFVYHPEQKFAEEQED*