Scaffold Ga0114980_10001114

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10001114
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19350
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (57.89%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F006138	Metagenome / Metatranscriptome	380	Y
F007164	Metagenome / Metatranscriptome	356	Y
F010463	Metagenome	303	N
F011284	Metagenome	292	N
F019102	Metagenome	231	Y
F023059	Metagenome	211	Y
F024265	Metagenome	206	N
F026543	Metagenome	197	N
F033350	Metagenome	177	N
F035669	Metagenome	171	Y
F093492	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000111413	F023059	AGAAG	MFEAAIASLAGVVGIVFWWLKNRAKTRKERDDEEIAYNRRLRDAEVDSWIHRR*
Ga0114980_1000111415	F011284	N/A	MTLEQGVEKTQKHFTKKHELHLTTLQVAAVESMEKKYKRGVEENFGTKLWEMPAVKLVENAIEEATDQLTYLLTLRSQMHIVMELARDGCTDETLTNPRARECCHLIYTTLTGQSKPPL*
Ga0114980_1000111418	F005846	N/A	MTSFPLPARPQASAVPASHIEFKKYTAIEGKANGWRGLFHQKTGIGYNRHGKIASNHNLMVERLANAGIKAPYIDCEIMGMRTKTGKGTIIVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFVQLAHHKINAIWEEMNFQNNKAGEVIWEGFVMKAMDDGKYPFITNPNYCSPAWQKQRIRW*
Ga0114980_1000111419	F005702	AGGA	VIFGLIIFVGLVIVRGLYLIAQHIDQQNYERRRFYLSVAADLDRLDKIVADGNQPKQPELTLPSKNWVGRN*
Ga0114980_100011142	F006138	GAGG	MAAVTIGTQGLSFGLVAEAGIGLVQSFSEARNVEKNEVRNNSGDIVAVGYYNATTSYSLSVAITGAYNVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVS*
Ga0114980_1000111423	F033350	GGAG	MSIDVDVPKLKWSMIQWKTIEEKPKNDEKVLMDIGGEVCVGRYVDGSFVSRSWGHSENDVRLWASWPKAPKW*
Ga0114980_1000111428	F010463	N/A	MVLAATIHRVKMCEDKLREFEQMVTTLTSTMAQNRAELASKGLEKFVIGVTTPLDIPKELVPTYGKAGARRNREYSTVKKRWTLWKHQLDSGMSMSELARAWGVHPTTILFAKSRNFVVRKAKGGSR*
Ga0114980_100011143	F026543	N/A	MTEAFWGTTNIKVASAVASFGAKPRQLDPVTRTIKEDGSTQATFWFEAGAGAEARAEMERPWSEMKSDPESPIRYVRAALENRETFLGLLKRAVPVRVIQRGGQTLLISENATSEQRRAILKHL*
Ga0114980_1000111433	F024265	N/A	MNESYVTAEAKANGILADRYPGKELEKLYAKTRNQATIDMLRDAVLTLITNEIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVNRED*
Ga0114980_1000111437	F007164	AGGA	MSEKQIGMELQKTVRLLDKAKQNAIEQMGEAIGLAADAGDILLSARVEGLDLDTIQEVAGINGEQARRYERVAKARPSLQAPSPSGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKTPTQWTPAQRSQFVEEARPIVEAYKEAGGEL*
Ga0114980_100011144	F019102	N/A	MSISLEEELNSAFISPEKEFMGDKLAPYTEGSRLLLLQVRDDEDSSIYFIWSFIYVHILLAKNKKDAIKLAWNKSLFREKIMEYIEGKTEADREIATTVVSNILDEAQKGKVDVIPAPHQPDLGNA*
Ga0114980_100011147	F093492	N/A	MGFSIIGSSIDSKVLQRQNFSKEPNGLETITESYAIKTSNRDTIVPEKGVVHFSFSSSTKKYPRMIVESVNTEEQDGGITQMLVTFVGLTTESGLPPAIVRLIPTAGAGIFGPPLTIEAEFVTDVTETMFIQGNINATAEIKLGNVSFGTVNQMPPFINGTQMPLNPRPPGFINGGYFFGQYFGYCVESFSCERRGLFLVARTTYTEKSGFFQ*
Ga0114980_100011148	F035669	N/A	MRENQINELQGTSILTKSFFNKLIRRIECTKPLAGSGITISEEENGFKISGGAGGGDVTGYSAITLNVCSNGEPAQIVVLGTAVTQ*