Scaffold Ga0114980_10000794

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10000794
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22664
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (45.24%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002227	Metagenome	580	Y
F003748	Metagenome / Metatranscriptome	470	Y
F005388	Metagenome / Metatranscriptome	402	N
F012040	Metagenome / Metatranscriptome	284	N
F015354	Metagenome / Metatranscriptome	255	Y
F026825	Metagenome / Metatranscriptome	196	N
F094803	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000079411	F003748	N/A	MFKVNRQDGAAQFINTEGDFVVTVSKVEESLDNKGREVCKVTFKTDDGSSTSDRFINQENTWFRVNQLVAATNHNVPDGTEVDFLGKKGSFGEFVKSMVGLKLIIVARFEEYVDQAGEKKKIIRVKNMKAVAPVAAEDNLPY*
Ga0114980_1000079416	F002227	N/A	MKLTIQSTQNAQVIVDLFNAIIHGNEAEGATPLSIYDEDKHICSLVRKNGEQILELVIEREVGDKLCAGAIEEVGHPASSPESVQERPEVN*
Ga0114980_1000079429	F094803	GAG	MAKPSEHWDEIKARYLSGEELSAIAEDLKLSVETVQTKASRTGLTKLRRQMQTVCKEKKIESLESLSALVRSKLAADAISTIERVDTYDLEGIKDESTREQILGSVAKRSALVFGWSEQGDVASVSINLLGSMPDRLDSITLSSKTIEAEQ*
Ga0114980_1000079431	F005388	N/A	MACPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTAAETWSAITLASGVPTGDNGGACDVTYNDVPVGYNAVTWGPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNIFAKYAIKAVADSSFTQTETIPAGVNEFPWIDGVSTGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRDDQRFADMGSGEGAQLLKRIGANRVIKNFRHVPNLFPPRFSYAGGKYTLIQPFTSANGTKGTVFSVNPTWTTAAYEGAFIVTPYVFKSHIVRPVNRVGDLGWMPTNYMGEWQWVTGAYKLSVDCVDPLDKKGQHYAEFMHAPEPIFTNQGMTIIFRRCTGALTQIICS*
Ga0114980_1000079437	F026825	GAG	MSDSHFFRYIYVGVGGPILGLLGNSIFSEPNLKIASIALGALAALLTCFVKSIELYRKIKNNK*
Ga0114980_1000079438	F015354	N/A	MNAYFASLLRHVLTAAGGFLVAKGLVSSDQAGELVGAAVTASGVAWSIYNNKKNADAAGQK*
Ga0114980_1000079442	F012040	N/A	MINWMRGLTKENPKNLLELPDVNIADWITNGQQAELSLIMRNPVLRMALRIVAESIPIPMPSHGSKESDIVFAAGVTAGYAHCLENLRKLAVVEATKELEATFDNKN*