Scaffold Ga0114980_10000791

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10000791
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22688
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (14.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017268	Metagenome / Metatranscriptome	241	Y
F039478	Metagenome / Metatranscriptome	163	Y
F050171	Metagenome / Metatranscriptome	145	Y
F071967	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000079114	F039478	N/A	MLKKILEFIDTVFEEEKEQPVLGTLYKIKGEVLPFRYIRFTNEVYSNKPVYHFKHHQLKEYKFNNLSRVERKANKEEVRIYNLIKEHVNEVAENND*
Ga0114980_1000079117	F071967	N/A	VSNLSESLAICSEFADEYGIDSKDNNKIIVYMKSEYINELKNMLENKNYKLKSFQVYGDEAIVYFIPKKRK*
Ga0114980_1000079134	F017268	N/A	VNLDITVLFNLILGALSFLGGWLFTRVFSLFDKQENLMKEINDKTFSDFITLRKEMESESRKHQQEISDLALKISTTYVTKESFDDYFDRIEAKLDRNFDIIQNHLIKK*
Ga0114980_100007916	F050171	N/A	MGLFNYIKVEQDLPLNEELKALNIDFKKEEFQTKELEENVMSTYIIRDYRLFELKITSHWEDNPDYVKDGSRFGEFFNKNKLVEDSREEVFRDDFTGVFTFGAYISGKTKESYDYFPDWKCVVVQGLLTEISLIKPIEKNSSCQRIEAQESFMKEIEDHERKMKCPVYSFYFKYYVKTMNLVEWKLSIGIVKIINFLNWLQWKGIRKVIKILTPR*