Scaffold Ga0114980_10000659

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10000659
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24654
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (80.77%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F001991	Metagenome / Metatranscriptome	607	Y
F002085	Metagenome / Metatranscriptome	595	Y
F058557	Metagenome / Metatranscriptome	135	Y
F078706	Metagenome	116	N
F083714	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000065910	F000934	GAG	MATLNQILAISESVGINDHRFVGQMLSRNQRISTSEILTVQPFQFDMKPMNYLLYSQNRSLLSNLREVDRQFESYLNFGSTGWWNYIAYQGDMSSAEISACEYEITSANKTIVLGSLPTMGSTEYIVKTGDFLQIDRYAYIATADVVRGVGSTVSIPVHRTIMTTLTSPMEAVIGQYGITQSLGGDTYIGVTFPVILQEYPAYTFVPMTNDSFISWSGSFKAIEAVL*
Ga0114980_1000065912	F083714	N/A	MVFNGHTIQHIDALDEATMNEISIMYADGLLGNKSLITTLGTLTAGVFNYMRPSSSLPYDLKGVIGSAYGYIYEDKEADPSDSLLTFMSQAPGFSIDKFKGE*
Ga0114980_1000065913	F078706	N/A	MSKLGSALGKKYEENRLSVLTRTFELGNHTFKVRIPAVNEIEAIYNYFKTPDEVKVEEAYQLMIKDLQGITTEEGVEVTDNDIIVDGRSMREAAKNKHVLQYRIVEYIKLLIPETGSLEDLNYEDVESEFPLAVQLTLVDKINEVIAPDYKEVRSK*
Ga0114980_1000065918	F058557	N/A	MAIKRYENVDVNDLTFGTDAYGQYTTTITKKFTTRPLVSDVKNSLAITERYRVYQDLIQFTMNYTPWMKDVVDNQNLYSITWRAKDWRITDVLESNDRMSVTLMCYRSDPETKV*
Ga0114980_100006593	F001991	AGGA	MAIFNKNTLQQVSGFDNEIIAGELVYNQKTFWNLAFNSDGTPVDLTDATIDATIIRRSVTNIHDSRYGLTFDIADYTPPPDPVSLSIENVDGAAGTFTLVIDESTWDVIDSDPQLDINAENCVGFSGRIKIGFPSSGSTPAQDMIIFLLFLVRSDGVVN*
Ga0114980_100006599	F002085	AGAAG	MNEIAPIQNTNNIRMADFVRLTTANGVYRFATTPSVLTIPAVDALPFDALGSLVKVNDVQRDIKSTANETTVTLVGIDTALLGFVLGHDIKGSLIEMWHGFFNDQNELITTGGTGGLYKFFTGYISSFSISEQYMEEARAYVGVITASASSIQIILQNRNAGRYTNDNAWQFWNNGDTSMNRVNFIETINYSFGKDI*