NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114980_10000607

Scaffold Ga0114980_10000607


Overview

Basic Information
Taxon OID3300009152 Open in IMG/M
Scaffold IDGa0114980_10000607 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25778
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (85.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004759Metagenome / Metatranscriptome424Y
F009203Metagenome / Metatranscriptome321Y
F057982Metagenome135N
F088545Metagenome109Y
F088775Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0114980_1000060721F088545AGGGGGMKVRQIRQRAKTHYISEEGFKFLRGAIGKRCRTYEAGCAVCDEWRFRDEHGRFVYNFEELRKYMDITEGEAE*
Ga0114980_1000060723F088775N/AMQNGGYHKATSGYLPLKRKVFLMQKDYKKCAKCGTEKPLAQFKRRLSRAQMQARGMKGAVLMTISSKNCKDCQPKRKPPRKQTPKQLHNMVVSGDIKEARMLEILAERQRMARLVMSKARYEAWVDQWRKELKAVLSPMTYEIHKVRAQIRYAEEVNNDEYLKLLEKYLSVLTREKSRILLDYEADPHKYKNEKRNWWDLVSDFGVESLRDRWMSIRKEDKASMKVPELLARRK*
Ga0114980_1000060740F009203AGGMTEHTDNVKNVLDFVAIFSTFGAFLEMFNPLFALIGAVVGAMRIYEMATGKDFYKLLSKKKADDAEHE*
Ga0114980_1000060745F004759AGGAGMAEDKKDLAQDKKMIKSAVGKHEKNMHPGKPMTKLKAGGKTNGDMLKYGRNMAKVMNQRSVGRGG*
Ga0114980_100006078F057982GGAGGMTKYRITYSDGCFADWDAMQKDLAWGYRWGIFLYAVRLNIGAWRAGHKSFKYWLYVLRRKPKITREKA*
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Institute for Fundamental Biomedical Research
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