Scaffold Ga0114980_10000580

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10000580
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26473
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (67.50%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F002149	Metagenome / Metatranscriptome	589	Y
F003112	Metagenome / Metatranscriptome	506	N
F004010	Metagenome / Metatranscriptome	457	Y
F012569	Metagenome / Metatranscriptome	279	N
F056556	Metagenome	137	N
F068578	Metagenome / Metatranscriptome	124	N
F078641	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000058015	F000635	GAGG	MTLTEIAQYAGEKIGKTDSDTLNFLQKSASLNYRRVWNFAPWRESITNSTYSVSTGTRTVSLGSLVENPLSVAYGDSELMSVDLQTIVSQDADLLDSDRTGTPSQYYFKGRNTSGTAEIDLYPLLNTTSTTTLKVIEKVTCITRQNNIVDFPPSSAAITDELRLPHVQHVVLALTHADALERERQYAKAQAVVSSANADLAQMAQYEMSQVGGIKVITPSSLGEYSITDIGV*
Ga0114980_1000058017	F002149	AGAAG	MTAIEYIEASGVPEGMWHNLADWFRWFERQGMVGIVEDSDGIAGVALARCLKEGQKPDHYVHSEDGDNVFVDLTVSSKGAISLRCLLLLLWERFGIRKRITFNRSGKPRSYDYMTFMRKAFIGSKL*
Ga0114980_100005803	F012569	N/A	MSADTDRFGARNGFTVGTASVAGSGYWAIQMLADTTFSAISGNYDGTLTGITIGSGNIIYGEFNSFTAGTGRVIAYKG*
Ga0114980_1000058030	F068578	N/A	MEAIDSLGTAVRELQEGLPVREHTEPTIEDVATHASTVIRKIMSRGSNKSRFGEWFHKNSLRYNSDRAIAHMTRAMQQIDGNTSSPDGSGETCIDHLERALVRAVFTLYKAKEGKIH*
Ga0114980_1000058033	F056556	AGAAG	MEESSKRWDANLVVIKPENPIGLLAKMSLVDAVQNSDRTLFVDSDVLISRECVNPFETFPHGHFYACADAPHGDQLHWGRANEMILSQAMLGSVKWTQGYFNTGVMVCDKQHAGAWANFVYAPFAFPEQTFTNYRARMLGYSIRFLSWEWNAMEINTPKDKKQSDGFMPHAAGIYGDARAKWIEEMDKVLP*
Ga0114980_1000058039	F004010	AGGA	MPLGKNVSKNMRELIKDNKKKGKERGAGGKARSFEQMVAIALRSAGKSKNR*
Ga0114980_100005807	F003112	N/A	MKRIATWITVLGLRLLLTAKDYACFKEALKCAEDNNRLARGTKYIGAVKHLLSVNRSIKRMVDDGRDRDEVVGAVVHLAVSLKYLESRNE*
Ga0114980_100005808	F078641	GGAG	MSEDQVWGIEVKLARMEERQVQLYQMVETSLSNYADVVNRVSALEHLRSRIFAIAGVAGLLFSVAWDLVKNRMNH*