Scaffold Ga0114980_10000567

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10000567
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26689
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (21.74%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008165	Metagenome / Metatranscriptome	338	Y
F050993	Metagenome / Metatranscriptome	144	Y
F066587	Metagenome / Metatranscriptome	126	Y
F074877	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000056717	F008165	N/A	MAHWRNLMKDNKYLGSWDLEVNGKYEPKVVTIERIYQDVFVGEMGKEDKVFVKLKEFDKPMICNRSNFKRLETFFSSFNAEDYVGKQIVMMTEKVKSPQGLVDALRFSVRPLPKKELPTLTADQMTKAIEALESGRTTIDKIKKAYTITNEQMEILNEIKN*
Ga0114980_1000056721	F074877	N/A	MEKEQMTAIILDYMLELKDEYEEMVSEFGYKDPSTQRLQTKYITLLTLIEKLKLEQ*
Ga0114980_1000056736	F050993	N/A	MRVIRINTTAWSEEDFYLVTTLDDDQIAKVIQPIVSAGRIWDDEYYDNDTLLQALKDRFPMEYSDMYTEFDKLTF*
Ga0114980_1000056738	F066587	GAG	MNNIGFHKTDGYIREITIREQLNRNINFVGINDIKHPIHGIIDVDRDKLQDLLKYTEGQLIRFKKSMFQPNKK*