Scaffold Ga0114980

Basic Information
Taxon OID	3300009152 Open in IMG/M
Scaffold ID	Ga0114980_10000443 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009152 Open in IMG/M

Scaffold ID

Ga0114980_10000443 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30100
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (75.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

30100

Total Scaffold Genes

52 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (75.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018002	Metagenome / Metatranscriptome	237	N
F037222	Metagenome	168	Y
F039599	Metagenome / Metatranscriptome	163	Y
F051789	Metagenome	143	Y
F077007	Metagenome / Metatranscriptome	117	N
F078231	Metagenome	116	Y
F089863	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000044312	F089863	GAG	MCEAYAAQQLSMNTSEEGWKEWAAGLKAIDIFVNEGIPGPYIFENWQDWATALVGAVNQPTDAPS*
Ga0114980_1000044320	F039599	AGGA	MLSEETIKQIFFQSDRPRKDPLIADEVDIIQFAHNIELFVEVAFARREHARCVEIVKHMNCAVGEALENQKPG*
Ga0114980_1000044324	F077007	GAGG	MRNQNAAHIDFFQFKGLIETNPKATPCDIDMVFERKCKFFVGEWKREGESISQGQGLLLRNLARQPQFTVVIIQGNTDGETVVEKFEQLCVDGVFRLRGKSFDDLKKFVTRWYNWANAQEFQ*
Ga0114980_1000044331	F037222	GAGG	MDTITPTPTSQSHSDWLETLTQTYAELALAGGEQALKDGRRDYLIHRFKELETPFPGITLMIHRKIRAMK*
Ga0114980_1000044334	F078231	GAGG	MNTEPELIDLYAMFALMMQKPVKGKSKIDVAYEAFEQAYAMIEIREDFVEKRKKKEKE*
Ga0114980_1000044341	F051789	GAG	MKIKTTIHVHYQKHSWEKEGAFKVFYCQLDDSEYRTYVGPQEIEIDVPEDYDPRAQQVAALEALKQKVMADYQKSVTDINDRISKLMALEYEATVAEESKS*
Ga0114980_100004435	F018002	N/A	MSLETQFSAHEQVCAERYAQINARLKRLEGILIKTAGVLIFSMSAIVYASLTLHR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114980_10000443

Overview

Ecosystem & Geography

Associated Families

Sequences