Scaffold Ga0114980_10000413

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10000413
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31006
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (33.33%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006936	Metagenome / Metatranscriptome	361	N
F008495	Metagenome / Metatranscriptome	332	N
F011222	Metagenome / Metatranscriptome	293	N
F014504	Metagenome / Metatranscriptome	262	N
F019318	Metagenome / Metatranscriptome	230	N
F020694	Metagenome / Metatranscriptome	222	N
F023103	Metagenome	211	N
F025459	Metagenome	201	N
F034182	Metagenome / Metatranscriptome	175	Y
F046247	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000041315	F019318	AGG	MLASLLIATQGLMPSPTPLSIGVQGLLFIPVVPPINPIDLPGGGGREREERKVTIKVRGNRLVFSVANVEACAGSRIQVAGSSCFTNAGEAGLSISAKTTVLGSRNHAGVSRAGLSISSTFNVIGCEEENELEVYLMAQAAMALMGD*
Ga0114980_1000041321	F008495	GAG	MAEYHGLFAMVDYCKPIYPQNDHGGFDRIINLQIWPDLHEDFCASPLGWSDYVYGLFPEGKNIDRQIVLNSPAIVTPPELKSWVLCFPTGYSQDKKIDPRDVITAAHQVANGRPVLCAGKAAHGMAEFESIEYMCAYIRDANEVVTINTSTSILASAFRKSWVHISDSPKHDFTHPNQRRIERKF*
Ga0114980_1000041322	F020694	N/A	MLDIFTNDLVAMMDDLPLAVTFGERNFLANRTTYRRDNSLADGGFLDSASMTITAVYDSFVQTISLGDVLVIGGRRFRVTSAELSQDAVSVDFSLEDINK*
Ga0114980_1000041325	F046247	N/A	MIISPNEQGWAFDESTAWKLVYDGSTIIFFDETEKSISTQSVLFVGTKDECEAEIARLGLVDVSAQGNDNGLDLHADA*
Ga0114980_1000041328	F011222	N/A	MPLAPRLKGAAFLYMDSNKKFFHTINLKAAVALATMGFKMNFPPVTRLVRTDGKESTEFWFEGENSKGQDASQVYRQMTKDGDELEAKDPENPLCYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISENASDKTKQEMTRFLK*
Ga0114980_100004133	F014504	N/A	MHDLTRDAAEYDEASYTPDFYSFDDPTAGHAFRMTAYREASEKLLVVLNKTISFLAEHGYSRSKTLWGVAFALGHPLTAGMSMLEAGRELGCTKQAISKIAMDFLDTTGLPPSTSLKSEEARNTYRKTNTNKYGTKRNHGTHPAGN*
Ga0114980_1000041331	F023103	GAGG	MAKFKFESLKFEQIMADYAEIREVTIPDAVMLNARLLCVELARRTQPFGEEQTSGTIRVKNDIGKIIKNTEQLDEYADRVGSQRIKARLNVLIKSGRFDIVETILRNIGFLNKWTGMEVIGATKMKSVHNEARNKTTGRTKSRGSKLFIASDSDKETYISEVQKRVGISKGGWADCATQLKKVNKGGLLAGFPTWVKKAMKSGSGKVQDMTGDIKNPRVFLTNNVPWASNVIPESEQDNATAVVVVKMRNQMNQILKKRQKNLVET*
Ga0114980_1000041338	F034182	AGGCGG	MDNHTFHTFVGTSAPAMAVLISFSEVEAWLRIASLLLGICIGAVSLYKMLKAKKS*
Ga0114980_100004134	F006936	N/A	MEQNEITALTLPVIETEIRSAYAEANALAVTAKGNARAAVLRMADCGQMLMVAKDHVRGNRNEWLASLGIDADKAAKAIHLARNRDQLELELWPADMAKLGAQMLGILPPPGSSGREENDPERTTGASTHWLTYAGKLQRSFTDLFARKPVEQWRQDERESLRVSLKPIVDIYNKLI*
Ga0114980_1000041342	F025459	AGGAGG	MKMTLEFDETERYEHEVACKGLDILILLDDIDQELRSALKHESGEFAKLDVETMEAVRAWIWEQRTSRNIPELT*