Scaffold Ga0114980

Basic Information
Taxon OID	3300009152 Open in IMG/M
Scaffold ID	Ga0114980_10000295 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009152 Open in IMG/M

Scaffold ID

Ga0114980_10000295 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35358
Total Scaffold Genes	61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (18.03%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

35358

Total Scaffold Genes

61 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (18.03%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010833	Metagenome	298	Y
F011074	Metagenome	295	N
F019816	Metagenome	227	Y
F020348	Metagenome	224	N
F033030	Metagenome / Metatranscriptome	178	N
F054029	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000029522	F019816	N/A	MRDLLPFERQMLLAEVYHYAWYNEEAYADLLTFIEKYQTILDKPVFLTHINNNDTETTNLEPLAFGQNLDTDPGINEVQ*
Ga0114980_1000029523	F033030	N/A	MTEKKWSAGAWKKTTAKGEVINFTIENVKYSMWVNSYKTEDKQPDYKIYVNDFKPKEDTEGLPF*
Ga0114980_1000029526	F011074	N/A	MQLVGINNPGEVKLAILEDWVRTEYGNFTINEVKVAFKQMVANDFIDHYQNFSPAYFSQVMDRYKKKANEVRKMMPQERVEAIPHLTDLKIIDYSYQEYKVLENRTFDRVFNPLSVFTKLNTSGIKVWTKEDGAIAKKKLMEIITFKASKMDFATAKQYRDEWTEQWLKNQARAVAVALFFEDQIKIGKVSFS*
Ga0114980_1000029530	F020348	GGA	MEIEHRNYLDHYRSNYEMVQNGYVRNIDLDILKMYEHIYRKYMSPDFILTVWCSHCIFDMIKRLYEWYDLQPKNKKKNG*
Ga0114980_1000029549	F054029	N/A	MELQQIFETTKEQRTEFTYQLIERLNNGELDPLKTHLQVKALEDMLETLKANKDYKDAVLQAAVLNGKDFEYMSAKFNIREVGVKYDYTKCESPAYEEIMTEYNSAAKAKKDMEEFLKKVPHQGLDIINGVTGEVTKVYPPAKSSTTSVAVSLK*
Ga0114980_100002958	F010833	N/A	MKYKQLLQLVGNLNAVIGGTETKTQKKLVQIYNKVKPYHEAYNTEVESLRLDAAQTDDKDCLLLDDKGNYKYSKDGIKKLTKDIEALNDKEFDFVIINIVNPKGLEDFTFLEDWTTGIEFNKQEEEEL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114980_10000295

Overview

Ecosystem & Geography

Associated Families

Sequences