Scaffold Ga0114980_10000287

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10000287
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35808
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (74.51%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006740	Metagenome	365	Y
F007742	Metagenome	345	Y
F033355	Metagenome	177	Y
F033724	Metagenome / Metatranscriptome	176	Y
F052465	Metagenome / Metatranscriptome	142	Y
F091642	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_100002871	F052465	N/A	DEAKVLEMLLAERRSGKRVSVLERLHQRYTALRASRERIEILQEARRP*
Ga0114980_100002873	F033724	GAGG	MPRPKSEITDVTKTVSARLIPAHYAEWKRLGGVKWLRQQLSQSLKEQRDARI*
Ga0114980_1000028739	F007742	N/A	MLWVLHHMTYYTTKGAAQALADTLAMQDADAWRYEVHASPRGFYVAVFDFDHFFLGNL*
Ga0114980_100002874	F006740	AGGAG	MPAFDTWSQENLAKFAAEAYAKMQEQDDRIQHLQNDLKDAINAYRELLK*
Ga0114980_1000028741	F033355	N/A	MKDNTMQTIKLGKTLYVTMRDDIMAHHAKCTGKHRKLKSKGAESRQYPVMGAIMSTAEYVAEYERLNAKKNLTAWGWQPLSTTLTVASGEDAYHEDN*
Ga0114980_100002876	F091642	GGAG	MDNDQKFWLCAWAMVLAFFITLMVCVTINAHGKRDKWEKAVSNGADPMVTACALDGVNSHAETAICTILAQGRK*