Scaffold Ga0114980

Basic Information
Taxon OID	3300009152 Open in IMG/M
Scaffold ID	Ga0114980_10000244 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009152 Open in IMG/M

Scaffold ID

Ga0114980_10000244 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	38265
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (25.42%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

38265

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (25.42%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016772	Metagenome / Metatranscriptome	244	Y
F032917	Metagenome / Metatranscriptome	178	Y
F053824	Metagenome / Metatranscriptome	140	Y
F091274	Metagenome / Metatranscriptome	107	Y
F093196	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000024413	F032917	AGGA	MLRKFAIFSLSSLLLCSCTTVTPDKVKDEIASYDATTPSGYDVQNSGFIGFTDDGRGLITPFGLLRYNTLIKAYKVRFKSFKGVELNENDGVTEFTDKLNNKLYIIDQQHLVYYAILNSWRKDGKEPDSIWDKTKDLIK*
Ga0114980_1000024415	F016772	N/A	MKKLLPFILIPILLTSCATTNNGGNSTGGTVDPRSGVEAALPYIAPAVTLTCTVVLEQALSPDDKVEKAKLINHVATVVEALTQGSTPTPDQLQKALSDYLPADKAHWAKYIVAVKDIYAAQFARLNGDAKLGIDVLNAIAKGCRTATEEYVN*
Ga0114980_1000024417	F053824	N/A	MLLLKMKGGMKFMSINYSNKDLRPKTFYVKMERSRNGEFTVKRARVLEQKNQYASTIRRVDARDLTRAIRRSGLQVA*
Ga0114980_100002443	F091274	AGG	MEYVSISQAIKAAADLNTPSTEYLNNFLPAYRKYHKRQNVRRAVCKIGSGLAVFVVACLCYSSINNSNKLDINTASGGEMAQNNTHGKQVVFEGDVREVTDFIRKHVKEKTQTIGLKEHFDADVWGVYVEGEEKFRFYYQCLGHGRYSVFVIND*
Ga0114980_100002445	F093196	N/A	MNNFIPYVVGLCLAGSIFYTVYSPHSSMVKQHIDSYGMDFEYVTPEGSCFTQNIEPIGHDSHKYILSLGKPAKPTNTEEPLYVMVGYTMKQVRVRYRSNALTSNNL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114980_10000244

Overview

Ecosystem & Geography

Associated Families

Sequences