Scaffold Ga0114980

Basic Information
Taxon OID	3300009152 Open in IMG/M
Scaffold ID	Ga0114980_10000239 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009152 Open in IMG/M

Scaffold ID

Ga0114980_10000239 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	38389
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	42 (75.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

38389

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

42 (75.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F070923	Metagenome	122	Y
F072014	Metagenome	121	Y
F082075	Metagenome	113	Y
F090310	Metagenome	108	Y
F102439	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000023922	F082075	N/A	MHAILRFRLPDEQAEFDAAMQGRDAKSAIWAVDQHCRSILKHGEPSEETRRHLEGIREMLRERPGLLDD*
Ga0114980_1000023924	F102439	N/A	MGEVQRSFMTDDDLPPAKGKRRRMPERLTPPMRKFLTKLARIGARVTWCIELLYDPSKGGQGELSDRARAGDHTLVLDTVREVEYRASQLAEDIEIFMTPPEKLPSEPGKPARVEAMARRQAAKLHIFD*
Ga0114980_1000023925	F070923	GGA	VPIVLQVQNPARRVAHACFICSACGREVTVGDAPAGMLAHLRGRLRAEIGPQAVKAGRAFDEFVDAICRCWNAEHWTKLARTQPESQMLAVMDAKVLIAKVGEDVEAMWGSSPELRTLYADVGHQAVEVFARLWFESMANRTWMRQACKEARRT*
Ga0114980_1000023943	F090310	AGGGGG	MSSVLRGIADSLAIGLQSVTWDITSTVVERKNWANIDVDAMSVPRVFVVPGNADVSRLSRQIMQVDYTVTIFVGRHVTTDAEVDGMLDLADSVMLQVRAHSFGQTVTWPAGVTSPQTVAIDLNPDDALTERNVWRAVITATYRVFESNVLPTV*
Ga0114980_100002399	F072014	GGCGG	MKPEWHYLPPPLDVVQALMQRAWDDDISDDDRILLETAAKTLEVTLDRCIRLASVIERTEVGL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114980_10000239

Overview

Ecosystem & Geography

Associated Families

Sequences