Scaffold Ga0114980_10000225

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10000225
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39940
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (82.14%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001094	Metagenome / Metatranscriptome	780	Y
F010232	Metagenome / Metatranscriptome	306	Y
F011647	Metagenome / Metatranscriptome	288	Y
F015719	Metagenome / Metatranscriptome	252	Y
F022871	Metagenome	212	Y
F046331	Metagenome / Metatranscriptome	151	N
F058945	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000022510	F010232	AGGAG	MRSREELLKIKEAFAYAMMDMLDVYDELIGNTPRKLWDGEQPEPTVNDLVKNEVESNG*
Ga0114980_1000022519	F015719	AGGAG	MTMYYTEVDGTEPTVSLQVGGTKYTFTNDSLTKLVEEKESLRTELAQVERKFKSAQFDVKEFFQSKYETDSDEIVCNLDDVNELLISIGSEQLTKSWSATITITATVTGIEAPNAEAAKDMLDDGFELNMTVDGDVWIDDLTIESVYPEA*
Ga0114980_1000022521	F046331	AGGAG	VSHSEAPISITIKTAAGSLVTVRAGDGTELDTIVSQGLDAITSATMELEKAIRGTMPAPMTVGQVASALGASISPIDNSTTTLGGRNCPHGKMTAIQGTGKDGSMYRGYFCPAAKGAFDKCKNVYLKTTDAAWNTFVPDQVK*
Ga0114980_1000022526	F022871	AGGAG	MSELENAWDSDEEFWDFVGQNRRMVGLAISDGQGLDILNSLRDVYLTIEKEPDSAMRMLTLLGTVIYASSIGEGKQFTDEIQIVAAMEQFDTNIKEILDEESR*
Ga0114980_1000022533	F001094	N/A	MDMNTTKLKAIAVTYIRAAVASVIALYLAGTTDLKTLALAGVAAVAGPVLKALDPSAPEFGRTNN*
Ga0114980_1000022549	F011647	AGG	MSSGQRKRHDGWNKSIMRDGMIVILRKDGSEKVRLDPKTKEIIKGSK*
Ga0114980_1000022553	F058945	AGGGGG	MECDHKSKVLDWAYELKDGQMNQHVSLYGCTECDATSPKPFISKEEVYVADHSNCHIDPCFGCKAKGLQLSTGDANGRAAMPRRKWEGELEAYRDARRQGIQPAGTTMEKIVAAEKASENLGRAYNAEKDPNAKQIDKKTAKVMTELGA*