Scaffold Ga0114980_10000147

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10000147
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46857
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (81.69%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003065	Metagenome	509	Y
F004788	Metagenome / Metatranscriptome	423	Y
F005476	Metagenome / Metatranscriptome	399	Y
F019448	Metagenome	229	Y
F085230	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000014734	F003065	GGAG	MKCWNIERKKMSEAQLNVWEKALGWRKRQMIQKQLNPISNKIRNDTLEEVAKEFDAMKNGGDTTASFAAYVRSLKK*
Ga0114980_1000014745	F085230	AGGAGG	MKVKELIAQLQECNPELEVYSWNDHEIHEIYYVDGGMDEWVHLNLGERQ*
Ga0114980_1000014748	F019448	GAGG	MTAMTKTQMVNACADYETDWFFDREPEEQREVFRHIQVHGFAGFANFTDNNLFASCVDKGTFLMEE*
Ga0114980_1000014766	F004788	AGGA	MMDVIEVLVKQSDEKIAQLKDYLSEGRAESFEEYKKLCGEIKGLLTARGYALDLQQTMEKMDD*
Ga0114980_100001478	F005476	N/A	MSLKIRHVETNYVQQVWPMVKPFIEEAMTKGGDFPDWAHDYTADHIQSFLTNGAWLLVVAVSEEGEIQGATTISFINYPMHRVAFVTAIGGKLISSQDTFDQFKALLKLRGATKIQGYGRDAIVRLWKRYNFEPRNTLVEVLI*