Scaffold Ga0114980_10000118

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10000118
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51322
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (77.08%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001106	Metagenome / Metatranscriptome	776	Y
F003408	Metagenome / Metatranscriptome	488	Y
F009961	Metagenome / Metatranscriptome	310	Y
F012456	Metagenome / Metatranscriptome	280	Y
F070122	Metagenome	123	N
F099281	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000011825	F001106	AGGAG	MSFDTLKVAELKVIATDFAVDSEGLKNKKDIIAALAEEGVTWSVYQSTLEAIERDTEEIEVLPKFDPKAQAEDTLLVRMTRDNHRYDIHGYTFTKDHPFVAMSEEDAQNIFDTEEGFRLATPKEVQDFYN*
Ga0114980_1000011827	F070122	N/A	MSLATSLMPMKLDIYLQLDTQDENTGAIKKEWIFTRSVPCAAKGIISNSGSGRSGDKQIFNNKYSNEQMLEIRTPDQITYREKITNVRDMSGNVVWKEINYPNNTPTVFEVISSTPITDPFGNVLAYNSVAKRSENQEIGF*
Ga0114980_1000011828	F012456	GGAG	LDSSVALIQTASGLERLMAGSAPGILRDSTVAQVSAFLYYEAAVLSKLTTNAEFKNLFKTTIFNQIEKDFGDYIDSQSRVKPRSLHHVYEWNKVGVPTARLFKLSRLDLDGLSFKINYDFKLSKSSVPSKNKKQKKKYIFANKALVMETGMPIVIRPRSAERLVFELDGETVFMPKGTSVTVKRPGGAQATNQFSLSYGRFFGGQLVNSSIKSSGLQRIFNSKMTKALNLPMNIKKVQYSFSPGKIRTQADASLQAAFGGSL*
Ga0114980_1000011829	F009961	GGAGG	MTVDYKIDAMFELRKFLWKELKDAGIFDPYNYYSDNLGTEIIPIIPVQQSPEMDQFLNGKKHIVYDKIGMSYEDIWLICCEKVLFTIYSTDITEVYEIRNLMMDLFRRMDESARDANAVRDTNKLIFHSIHVVETSPIEPSAELKGFMSTDVILEVKYSRTTDSEGRFN*
Ga0114980_1000011832	F003408	AGAAG	MPELIQTFKSMQKSESEKRKFLASIQGVDLNESSNQNEGESTFEDIKRRALGINASADDVVSLQGAFASEAGFGIGAGLGYSIE*
Ga0114980_100001188	F099281	GGA	MAIVNKNFKVKNGLNVAGPATFDAAVNVDNLVLNSTPLAFDSSTGRLKIQINGAWKEIALLTDAAEDLGALTFMDIGLAIDYDGQPVYTVFANGVNTTATKFADGGNHSTDTYSMTFDSGTIS*