Scaffold Ga0114980

Basic Information
Taxon OID	3300009152 Open in IMG/M
Scaffold ID	Ga0114980_10000050 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009152 Open in IMG/M

Scaffold ID

Ga0114980_10000050 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	72491
Total Scaffold Genes	93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	66 (70.97%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

72491

Total Scaffold Genes

93 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

66 (70.97%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001464	Metagenome / Metatranscriptome	689	Y
F008814	Metagenome / Metatranscriptome	327	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000005010	F000671	AGG	LSEKILCYSCNKTKNKLNLKKSSLLPINLFLCQTCIDDKLEPRWVVLIAGRQFGHELVKDFIQKRKYIGAEITASELLI*
Ga0114980_1000005011	F000473	AGG	MVSNVYDNKHFKYGMNQWTGEPNKPVFYTEEMKKRVWELKKPMFLLMDIVKYPDFLALRLYEDNFIQFDGVEKEKVIDYVTKVKKLLESYGVRVELEGKPTN*
Ga0114980_100000504	F008814	GAG	MDKKLTVLEEIIKEIGEELYQKWYNALAVEDRTEEASRAMSVNAGETAIWVIQKFMDKFNKAADELKGE*
Ga0114980_1000005056	F001464	N/A	MVAWCYPDKKRLLYSYSQVLKTMENAYSTSQVAQMLGKHKVTIEDYILDGKIRYPQKVYPIGNPESTWYKFMYSESDIMDIHEFILESGYSNNMPSRNEMRALLKHNTILYTKTTEGNFVPVWKAE*
Ga0114980_1000005072	F000258	GAGG	MANYKLDAMFEIRKFLWNRLTWLGIFNEEEYYSDNLNETLVPIVPVQQQPEMNQFLSGKKHIVYDKIGMSYENNWMICCEQILLTLYSPELIDIVEIRNFLTDEFRRMDESARDVNKWAGLSDKFKFHSIHIADISSTAPSEEIQGFYAADVILEVKYSRITNGQGRFA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114980_10000050

Overview

Ecosystem & Geography

Associated Families

Sequences