Scaffold Ga0114980_10000014

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10000014
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 108731
• Total Scaffold Genes: 111
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (11.71%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015602	Metagenome / Metatranscriptome	253	Y
F031491	Metagenome / Metatranscriptome	182	Y
F048998	Metagenome / Metatranscriptome	147	Y
F066792	Metagenome / Metatranscriptome	126	Y
F073559	Metagenome / Metatranscriptome	120	N
F093878	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_10000014101	F048998	N/A	MSTKKLTPIIAKALAEKVRAELIARHKGSSETLVKKVETSKLYKELLTTISKIEELEERKQVIRKQIEEQYSNKLSDVSVSNYHTPPQISVNYHSTFYVDSIKDMILIEDYMSDDTKTPEEFVNYIADKINF*
Ga0114980_10000014108	F093878	N/A	MSENQITEEQQVPTKEELINFFKEQIEVKKVQLELQELNTNLAVAKAEELKALGFIAQMTTQPGQKSAQPEGQPHTLTQEDLDNNPDLASGGFMVGDDIMIPTQPEEAPIKKLKKK*
Ga0114980_1000001412	F073559	N/A	MEKISLKLFEFYNLDAELNGLTNQQTGEKIASGLIQEKLSLVTKYWLTDLGKKVAAEKASVEELKNDLIKKYGKEDDKGGISIPMVIEELDSDGQPIKDLDKDGNWFTKKTINPDYQSFEKEFNDLLQTEKELEYKVFTLDDFEKVETSENYGTFFKLVKVEETKVVPLN*
Ga0114980_1000001462	F031491	N/A	MSDDEHKEWKKAKLDAIRDYHQELIDDLKILRTDFNMKMPFYNSRGEMVVGIFASEFKKEKGFFFELVTRGLEPINTERTVYRVQPSVTFQDEYELNEKGSYLVSLDELRTVNPQSVAISKSSAVTSSDRFNTKQPTAPTPDVMYKAPAPMEDAPYSEMTIRDYYAIHTGKPVSVKTWLNELIKQK*
Ga0114980_1000001468	F066792	AGG	MTPRENPSIAAFKVWVFPTLVSLVSLLIWNDVNEIKSDVKLLMAQSNIDKTRIDNLERQMFKTASVPEEPTKQLIDFQQVLAVLPDNKTLKGKYYKTIKYDF*
Ga0114980_1000001486	F015602	N/A	MNQSFIGKLIKKNGRLEFSSLAQSKQFEYYASDVPDGMIVECFYEMTHDDGTLPQLAKLHVIIRQLANHIGETAENMKILIKDRAGLCISREVAGREYFLAKSFGECSKEDLSLAIQAAMEIGEEINFPVG*