NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114962_10284075

Scaffold Ga0114962_10284075


Overview

Basic Information
Taxon OID3300009151 Open in IMG/M
Scaffold IDGa0114962_10284075 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)930
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009960Metagenome310Y
F014137Metagenome / Metatranscriptome265Y
F049619Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0114962_102840751F049619N/AMLTIKNLNKLNHKTLGKKNFYVARIEEQVSYDNVSLTASEHQYKFELSNRKYAITVTLDRSNPKLFVVPHYKLTSSTGKILFITGRQISNIDIFI
Ga0114962_102840752F014137GGAMLTIENIQTIIGKTYNELFNIIGVKEEKSYYEFTLGYATVGKPNYETILLHRKQTDNGMYIMEYNNKTLWLNTNEFDTIDKIIICMQTI*
Ga0114962_102840753F009960N/AMRRIENIQKIDGYALEVKGKGYYFKGWDNTTNDVAYFTLAAVSLSNPLIRITLHKTGLMVFDDIQKKDCYVYGVAVDGLLFHYTKEKLNTPAEFRNTIEQILNGI*

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