Scaffold Ga0114962_10181575

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10181575
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1242
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011292	Metagenome / Metatranscriptome	292	Y
F042869	Metagenome	157	Y
F044911	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_101815751	F042869	N/A	MNKLIRKEDTIKNWVPIGSLELKLAVARAEGYAIRVDETRYHHIVDETVVTSVDESKPKYYYYGPQQLSLPRLNPYRIAMEFYLKEKSK*
Ga0114962_101815753	F044911	N/A	VGKGQENMTFDELLHKDAARYATNRKLAYIEAMDKKQVEPMSEEVLNGKWLAHYEGYREGYWVATDNTEFTTDPFKERT*
Ga0114962_101815754	F011292	AGGAG	MTPQSFDIDTCKEVVGDARMRVIEAKARQDADNGVVDAPKEAKGTYWDKAYSYMEYIVYITAHHKRLERIQRMKEKG*