Scaffold Ga0114962_10141638

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10141638
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1454
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → unclassified Chlorobiota → Chlorobiota bacteirum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006547	Metagenome / Metatranscriptome	370	Y
F040624	Metagenome	161	N
F047676	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_101416383	F006547	AGG	MDKINNMKWLLVLLLPLSVSSQIYDTTYQMVYYQKSLIKKGKVELYGYTSYDLWWQDESGITMTIALPNKRKKKKK*
Ga0114962_101416384	F047676	N/A	MELIITIIVLIIIFSIGFLVGAKQGTNQLVNQIKKDGGYFDMEYTSSAYPILAPTSSINNDTMGTIGSKPKTQTDYQMEHKAEGETPAIDFMHNWIQEKSGKKPTSQKRKPKTVKEWESEFDIGGHG*
Ga0114962_101416385	F040624	N/A	MELLFDNTKKQIMKSEKVMALYKRKKELEQQIIYWEKFQGVNWLGKWGRSVKLEVLKEKFVKIEKQIAKLKNK*