Basic Information | |
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Taxon OID | 3300009151 Open in IMG/M |
Scaffold ID | Ga0114962_10141638 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1454 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → unclassified Chlorobiota → Chlorobiota bacteirum | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006547 | Metagenome / Metatranscriptome | 370 | Y |
F040624 | Metagenome | 161 | N |
F047676 | Metagenome / Metatranscriptome | 149 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114962_101416383 | F006547 | AGG | MDKINNMKWLLVLLLPLSVSSQIYDTTYQMVYYQKSLIKKGKVELYGYTSYDLWWQDESGITMTIALPNKRKKKKK* |
Ga0114962_101416384 | F047676 | N/A | MELIITIIVLIIIFSIGFLVGAKQGTNQLVNQIKKDGGYFDMEYTSSAYPILAPTSSINNDTMGTIGSKPKTQTDYQMEHKAEGETPAIDFMHNWIQEKSGKKPTSQKRKPKTVKEWESEFDIGGHG* |
Ga0114962_101416385 | F040624 | N/A | MELLFDNTKKQIMKSEKVMALYKRKKELEQQIIYWEKFQGVNWLGKWGRSVKLEVLKEKFVKIEKQIAKLKNK* |
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