Scaffold Ga0114962_10051795

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10051795
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2699
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006547	Metagenome / Metatranscriptome	370	Y
F019478	Metagenome	229	Y
F022886	Metagenome / Metatranscriptome	212	N
F053288	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_100517952	F019478	N/A	MELKIKNTNRMVGIMFWNRRFTCLQVHETDTNYRFQFDDSEVPSRYVWVEIRKDGRMDSDGDWVYSLNYMRCNQHSITAKWFEDWHNVTKTFGDALKKQF*
Ga0114962_100517954	F006547	GGA	MKWIFIFLFPVLVSAQIYDTTYQMIYYQKALLKKRKFEFYLYTSYDLWWEDESGIGLVYTLPNRRKKKTKRK*
Ga0114962_100517956	F053288	N/A	MITIQNYNSDVGHATFYGWDMKYALEDKDFYSFEFEHRNEQKRVYVLIHRNKLKSKKRAKHFPISGDLHEVYIQDMVSDKWRRTVNLAKTSLNKSAFYNWVESVIDDEYGLPF*
Ga0114962_100517957	F022886	GGA	MFRSQIDIGELELYYEITYYYPTLPSNEYYKITLSRISPPQQDHPHKDEYLMLCGVSEYWLNKKELEDVDSVYEAIVDVVVRHNLKVKV*