Scaffold Ga0114962

Basic Information
Taxon OID	3300009151 Open in IMG/M
Scaffold ID	Ga0114962_10045902 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2902
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	5
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F003714	Metagenome / Metatranscriptome	472	Y
F005588	Metagenome / Metatranscriptome	395	Y
F010765	Metagenome / Metatranscriptome	299	Y

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

821

Metagenome / Metatranscriptome

472

Metagenome / Metatranscriptome

395

Metagenome / Metatranscriptome

299

Protein ID	Family	RBS	Sequence
Ga0114962_1004590210	F010765	N/A	LDRPPQMSPLSTPPQPDDMPVALRDLGFGILIGSAAWLVRYLCSTEKHSLGYIFRRTATAGLTSLLVGIATKGYFSSEGMAFAAAGCAGYASPELVDLLLAKIKGMKGKTPTKGD*
Ga0114962_100459024	F000957	N/A	MSNFQHLEGMRNLLIEIYEVNERIMTGDIVSPKAAIASTNVKKILNHYHEALHEDGAVKVSLQAYVAAGGWVGITYSYELDGFEVAGSQVPRRV*
Ga0114962_100459025	F005588	GAG	MPNPLAHSTDMITTIRPNKMPTLWWLFPWAYARTLHMSANAVKAYADRVDDILEIQRSLIEEQAADIRLLKARVRDQDDAIIKGTAITPDAYPHE*
Ga0114962_100459027	F003714	N/A	MPNARHPYTETLTFAGRVLPLKRPMAEFAARRLQAILPQIAALNAAGKSQGDAAAALETTVTTLRHWLDMTGTTWVNVKRRGPYSSRA*

Protein ID

Family

RBS

Sequence

Ga0114962_1004590210

N/A

LDRPPQMSPLSTPPQPDDMPVALRDLGFGILIGSAAWLVRYLCSTEKHSLGYIFRRTATAGLTSLLVGIATKGYFSSEGMAFAAAGCAGYASPELVDLLLAKIKGMKGKTPTKGD*

Ga0114962_100459024

N/A

MSNFQHLEGMRNLLIEIYEVNERIMTGDIVSPKAAIASTNVKKILNHYHEALHEDGAVKVSLQAYVAAGGWVGITYSYELDGFEVAGSQVPRRV*

Ga0114962_100459025

GAG

MPNPLAHSTDMITTIRPNKMPTLWWLFPWAYARTLHMSANAVKAYADRVDDILEIQRSLIEEQAADIRLLKARVRDQDDAIIKGTAITPDAYPHE*

Ga0114962_100459027

N/A

MPNARHPYTETLTFAGRVLPLKRPMAEFAARRLQAILPQIAALNAAGKSQGDAAAALETTVTTLRHWLDMTGTTWVNVKRRGPYSSRA*

NMPFamsDB