Scaffold Ga0114962_10043419

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10043419
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3000
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F003304	Metagenome	494	N
F011918	Metagenome / Metatranscriptome	285	Y
F020665	Metagenome / Metatranscriptome	222	Y
F021063	Metagenome / Metatranscriptome	220	N
F022371	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_100434193	F020665	AGGAGG	MKRKTRDIKLVKVEEFKAAKIVVEVEDELFEAMAQAGRKHISKDKVACFSYALNKALLELCEEVK*
Ga0114962_100434194	F022371	AGGAG	MLCLFELKDIVWVISWFILYSWIFLSIIYCAGYIILKLIDFIKEELEL*
Ga0114962_100434195	F021063	GGTGG	VRSTHLCRGDYDERLQQLAGEVALQAIRDLRLLRKRGMVRGMKIIKDHQGVPLNDALEYKNSHEVQKLLRDFKTGVVSWWCRASGVQIDNRTLLRKLKENDYALPI*
Ga0114962_100434196	F003304	N/A	MKQALVTQSFGDEWQKIIDLTKPRMEAYCKRHNCDFILIDKPLTHPMQYSKSAIGNIMATKGYDQVTFVDADVLIAADCSKLSDDAGVFCAFDEGAYLDRKPEMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIKEDEAKLVGLGR*
Ga0114962_100434198	F002009	AGGAG	MTPPTIQEMGNAAQEIVWRVMGKGSEKSGYGDWLEKDRPTHDYHIARAVRHLATAQMQLHKSTPCPDNNGETSVDHLERALVRTLFVLAQIKKEVPRL*
Ga0114962_100434199	F011918	N/A	RNASENPKAACVSVVLASNDPEYIEHHKWDEDELYQAGIAFCAMQKVWAWVKGYTPPGMKL*