Scaffold Ga0114962_10040207

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10040207
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3144
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001106	Metagenome / Metatranscriptome	776	Y
F035307	Metagenome	172	Y
F056615	Metagenome / Metatranscriptome	137	Y
F058150	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_100402071	F000258	GGGGG	MTVDYKADIMLDLRKYLWAQLKSNSIFTATDYYSDNIGQEIVPIIPVQQSPEMNQFLNGKKHIVYDKVGLSYEDNWAICCEQILFTIYSTDVSEINEIRNLMTDLFRRMDDSAKDANAYSGISRKFKFFSIFVADISPTAPSEELAGFLSSDVILEVKYARHLDTAGRFL*
Ga0114962_100402072	F035307	GGA	LDNSSLLVTAASGLQKTMVGTKGAILKDSTVAQISAAIYYQAEVVSKITTNKQFQARFQSVIFKQLQQDFGLYIDAQARVNPQSLHHVYEWNKVGNSGSRLFKLNITERNGLSFKLGSTFLMSKSPVPNSFGKRKYVFKNKASVMEAGMPVIISPRAAKRLVFETSTGTVYMPIGASVTVTRPGGGKATGRFQIAYARFFTGNLVNLSIKRSGFQQIFNSSLTKAMRLPSEVRKVKYSFSANTLNMQAESAIASAFGGI*
Ga0114962_100402073	F056615	N/A	MYDLADSIMPLFADIYKQFDIQDPDTGSIKKQWQFDRTVSCSAKGIITNSASSRSGDKQIISNKYTNYQSLEIRTSEKLTLREKITNIRDAEGTVIWEELNFPTNTPTVYELMGTTPITDPFGGVIAYNSAVKRSENQIIGQ*
Ga0114962_100402074	F058150	N/A	MEILVGSNSPVTHKVFWQGQLTDSDSLPTVRLYDITEDPAISPAINPATILATLTPVKSEADAGTYIVYIPLTYTDRQRQLKLSWTYTVGGVSTQKDNKVFVQTPYTDMTQVIDSLGLGSDYSDPNSKSYAELCNAEKYARKLIEAYTKQQFFLYDDIQIAYGSGSDVLPLPYKITTLYKLYQNDILLLDTINSINNWNYNTIISESGFGIRVNRANMLDNTVYTANGMVPPTINDTWNGSFNTRSTYRVQGKFGWKDIPDEIDLACIELMKDYFSKDKIWRNKYIKNIKTFDWEFEYNSGTYSGTGNLYADQLLLPYVINQMVVI*
Ga0114962_100402075	F001106	N/A	PNKGEYMSFETLKVAELRKVAEDFAVDTDGLKNKTDIIAALAEEGVTWSVYQKTIKDIEKAADEFSEEAEEILPRFNPDAQPENTMLVRMTRENHRYDILNYTFTKEHPFVAMTSEDAQEIFDKEEGFRLATPKEVQEYYA*