Scaffold Ga0114962_10034077

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10034077
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3471
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019602	Metagenome / Metatranscriptome	228	N
F022413	Metagenome / Metatranscriptome	214	N
F043225	Metagenome / Metatranscriptome	156	Y
F100405	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_100340772	F022413	AGGA	MLLAKPKLTNTLDAKQFETFAECQEYLEAYTDISMSLVEWIALGKILVAETMTTPEFYPKKVKGQIVMAKFDIEEFA*
Ga0114962_100340775	F043225	AGGA	MNLDLINAELQTVALTQQEEQINLTYQDFLDTMNAYHDMMMYSSNSYDEDAIFYGVN*
Ga0114962_100340777	F100405	AGGA	MTKSAQQYTKIFEVLQNAKAPVPVSTIRAIDGIVATRLSTYLWEIKKNTGFAVRANRDGRTVVSYELVGAGTAPVAKLAKVKAVKAPVVKAAKPVVAKAKKVTPTPVPAGDSLDGIMNAMAKSSAKKPVNLLDEIDTDVADYEDRAFAEAYIRT*
Ga0114962_100340778	F019602	GGA	MDDRAVIERYILEAWDKGLTGTDVINYVQYMSSVPVFEIEPVLQNLIVRMSE*