Basic Information | |
---|---|
Taxon OID | 3300009151 Open in IMG/M |
Scaffold ID | Ga0114962_10029435 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 3783 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004696 | Metagenome | 427 | Y |
F008359 | Metagenome / Metatranscriptome | 334 | Y |
F008491 | Metagenome / Metatranscriptome | 332 | Y |
F025025 | Metagenome | 203 | Y |
F080039 | Metagenome | 115 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114962_100294351 | F008359 | N/A | MSKSKLNQKSLYEIKKVKRVMRMKSEGFEPTTFEVYKVSGPNKFRKYFVSRKDAKSFIDGYTDTKMTLGIVKNIMNEIKMK* |
Ga0114962_1002943510 | F004696 | N/A | MDYAIMKLKQDEIVLMKKIKGLQDGKPKWAAAEQLDEIRSAIELLERYNSITEQDIEDEDTYLKQVFVSHPPKAKA* |
Ga0114962_100294354 | F080039 | N/A | MRRSLNHNLVSEKIGYDYANKKMMIRVYDSLKYVVEDFTKKPTWTAVVKHMLTLDGMLGGQLCEVSVNGYYSTIRKNLKDIKVIKYNAHKCLVKGENWNRFFGDEDWSWFITNTNSGGYGIIVK* |
Ga0114962_100294356 | F025025 | N/A | MSKKTNEIKLGKRGYKAVVKNKKFNFGDGKHIYEVIELSGPKMDKPRIFVDEASVRKYIGEIEVETKMDKLETSLIKNVLSKKDKKELLASKVMEGVLVSNKLALDPTYSQFYNGGSISVETTTGNKEDTDK* |
Ga0114962_100294358 | F008491 | N/A | MAKKISTKVNYQVTELVNNLNEAATTQSEQKRDFFTTKALYNAKRLSSILSTAKVGAMMLILALGMSACGSNNTVAVNADSTSVKADTAKAIVADTATAVK* |
⦗Top⦘ |