NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114962_10029435

Scaffold Ga0114962_10029435


Overview

Basic Information
Taxon OID3300009151 Open in IMG/M
Scaffold IDGa0114962_10029435 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3783
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004696Metagenome427Y
F008359Metagenome / Metatranscriptome334Y
F008491Metagenome / Metatranscriptome332Y
F025025Metagenome203Y
F080039Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0114962_100294351F008359N/AMSKSKLNQKSLYEIKKVKRVMRMKSEGFEPTTFEVYKVSGPNKFRKYFVSRKDAKSFIDGYTDTKMTLGIVKNIMNEIKMK*
Ga0114962_1002943510F004696N/AMDYAIMKLKQDEIVLMKKIKGLQDGKPKWAAAEQLDEIRSAIELLERYNSITEQDIEDEDTYLKQVFVSHPPKAKA*
Ga0114962_100294354F080039N/AMRRSLNHNLVSEKIGYDYANKKMMIRVYDSLKYVVEDFTKKPTWTAVVKHMLTLDGMLGGQLCEVSVNGYYSTIRKNLKDIKVIKYNAHKCLVKGENWNRFFGDEDWSWFITNTNSGGYGIIVK*
Ga0114962_100294356F025025N/AMSKKTNEIKLGKRGYKAVVKNKKFNFGDGKHIYEVIELSGPKMDKPRIFVDEASVRKYIGEIEVETKMDKLETSLIKNVLSKKDKKELLASKVMEGVLVSNKLALDPTYSQFYNGGSISVETTTGNKEDTDK*
Ga0114962_100294358F008491N/AMAKKISTKVNYQVTELVNNLNEAATTQSEQKRDFFTTKALYNAKRLSSILSTAKVGAMMLILALGMSACGSNNTVAVNADSTSVKADTAKAIVADTATAVK*
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Institute for Fundamental Biomedical Research
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