NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114962_10029372

Scaffold Ga0114962_10029372


Overview

Basic Information
Taxon OID3300009151 Open in IMG/M
Scaffold IDGa0114962_10029372 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3787
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001059Metagenome / Metatranscriptome790Y
F006264Metagenome / Metatranscriptome377Y
F025283Metagenome / Metatranscriptome202Y
F041182Metagenome / Metatranscriptome160Y
F103134Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0114962_100293721F025283AGGAMLDKQNIIVESLESPPGNKGIEYQVAHEAYLKMVDYLRLTQAKNTLNRLSDYHYLNIAVSNSTEPVRGIDYISPVVSPGIDYSTAVITKCLMPNGK
Ga0114962_100293723F006264N/AMEDLSAIFRQRLSGQAEVCARKTLEWLQKDLQSEQKLQPDEIHYLAMAAQILLDIRDRYGKK*
Ga0114962_100293724F001059AGGAMATYDIEALKADLPTAKELAQFVFDKTNGLISLDLVGKPKDDQYQVAKNALEGKKIPAEFITGANPYMDKKDEIPEDPLRVMPPRDTSLPDPDAQIHFFGATNMPHPLDPQSDKKVYIEFRKYENGMITYTITGPVEQVPVGEKKNRYGQTVPEKYTWIDPRTPETVMRNADGTFTKEGRGLHTYCVGEKGGGIWTLIDRDMVTVTAKNIANPWA*
Ga0114962_100293726F103134GAGGMSGYGKVINGGKQMSKGLTKGINNKLSGFEEENERRATIANAVANAFKVRHLSDQTTNNVKGGKFQSPKEHAKVQV*
Ga0114962_100293729F041182N/AEAMQSDELDIKDKARIADKLAPFESSRAPVISIEHVQNIVREEEVSADDAMDDFLDSLRKV*
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Institute for Fundamental Biomedical Research
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