Scaffold Ga0114962_10027451

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10027451
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3942
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029418	Metagenome	188	Y
F031359	Metagenome	182	Y
F043777	Metagenome	155	Y
F080877	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1002745110	F029418	AGG	MTPEEKKQKFEQDIIEVAVAEYYQWVEAHEDVRSEKHAKMFYDAMRLGVIRGINYATSQYMQSLKNFEEKNNENKTDI*
Ga0114962_100274516	F043777	AGGA	MKLINGTEVIDNSPNEKAGELAEAIYDDVLFILDIEHKCIQEDDYGNTSDTEYGQDLFNCIYEQCMAYFERETK*
Ga0114962_100274517	F080877	GGA	MTELERDIDPPSPQETLKIKRWWVGYLWEDGTEDTLTIPNNMGKTINEVEALLDEVEYEVNRDILEHQAQKYGDPDGDY*
Ga0114962_100274518	F031359	GGAG	MVTTEKKQKQIIVEQVIVTGYVKHGNGRKSPFSYNKNDFKPNDLLGIFDGVGRIYQ*