NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114962_10016486

Scaffold Ga0114962_10016486


Overview

Basic Information
Taxon OID3300009151 Open in IMG/M
Scaffold IDGa0114962_10016486 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5297
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015702Metagenome252Y
F027758Metagenome193Y
F036551Metagenome169Y
F053128Metagenome141N
F069714Metagenome123N
F094887Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0114962_1001648611F094887GGAMEKELKEIDEAITNLWWAAEISDKAKLWWNDHYRLLMERELAK*
Ga0114962_1001648612F069714GAGMKVEIKESYMPEYTKAITFECEGKEYLAEVYLGKHCSDYTLYEGNKRLEDKPVWLEKAEQKDPNFSFMFFIDNLAWEYEQRKEKV*
Ga0114962_1001648613F036551AGGAGMNEILETLLNNEIRICELCGSNEWRILHAGDESNCECEGECLRVCDSTLLNDDGCDGVAILMNEREASK*
Ga0114962_1001648615F015702AGGAGGMLKEIELEYTVNNLVKLSRQRWGDNATEYLAGALESVITYKQMKVLIDSLKEKEGEGK*
Ga0114962_100164865F027758AGGAMLIDLFLLSSWVFGLFAVAGGLVWLLDRLASFHLAGMERVRKLQARERESEGAR*
Ga0114962_100164869F053128GAGGMKGYFVIDRQDTGWKEGYLWKSIKEIADSIRDYDDYKELEVSNLTHSQLCELWDFEYHRITPANCNKYSVRPSELTREYV*
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