Scaffold Ga0114962_10016070

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10016070
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5377
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007690	Metagenome	346	Y
F017998	Metagenome	237	Y
F031098	Metagenome / Metatranscriptome	183	N
F037728	Metagenome	167	Y
F038234	Metagenome	166	Y
F038242	Metagenome	166	N
F084228	Metagenome	112	Y
F090305	Metagenome / Metatranscriptome	108	Y
F099298	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_100160701	F099298	N/A	MLTITNIEKLYKLNVGNWRIGKVETLDSAYLIQLRKYNSIETKQVNIERTPIGEGDTALYEL
Ga0114962_1001607010	F017998	N/A	MNLERLDLEKYEVLELERDRTLADPLYQQWMSELKVSSSYTDREGIIRANDLNNQYTYSVLAGNKSTKFSVSSILSILK*
Ga0114962_1001607011	F037728	N/A	MEIHSDYFEVGYCSNGKDRYLIGLDTRDVVSFKPLEPKHYKMSIDKVTNEDGNYGIWLWDMGENISYPMSIMPDNISSLSEFTSFLNHTLKLANNGDFSGDTGNRVDN*
Ga0114962_1001607013	F031098	N/A	MKTYYDIAIHTASNDVVNVKGVSYSMMMKIANDNPTLIKVEIVKEYSKKISKY*
Ga0114962_100160702	F038242	N/A	MLTIKNIKELELNFCHQRGLKRIKERTNALGEHFYCFNFGPISDGKGWNKETEVRLGRELQRGGYQIFVMGLQMSTRHFVTIDDIKTKDGLVLAISKVLAQAKWWWENEATK*
Ga0114962_100160705	F007690	N/A	MLTIKNILKLQGQGIWDGWDVTLIYEGNHNDTYIFELHRESAWGNGDCKIMLERTGHKIFGQPGLSYFFIYNSQRTNISASADWLADKDNMIAKLEYILVNKEKL*
Ga0114962_100160707	F090305	N/A	MLTIENIGKLTNTKLGYWTVVEAGVSRPKKWCMSEHYCITLDRAGNGAAILIWRNINPLTKQYHVDVCYEDFTNKIYEGAFSKRVIMDKGHFLANMMGYIKAEHTLRNKK*
Ga0114962_100160708	F084228	N/A	MLTIQNVTKLAGRRIFGGWVVRDMNCHPTQNKYMFDIHCMGPLGNTIDRCTVSLNRIGQLQREMGKPDYMVYFFNYNGEQTDVCVTKDWILNPENFISQLKYIINQYHNKQ*
Ga0114962_100160709	F038234	N/A	MLTIKNIGSLKDTYVGHWKIHYIAKLADTYIIKVVHNGSPFDMFNLMIGRVKTSNGDYLMYCQETGKTKNMPIEDIRNSYTFIRFLIDELI*