Scaffold Ga0114962_10015076

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10015076
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5564
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006142	Metagenome / Metatranscriptome	380	Y
F097351	Metagenome	104	Y
F103254	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1001507611	F006142	N/A	MKRKNKLILEFSEFNIQHMTPDSAQSSVNVDDPKLSLNAFDKFQDGIRSAMSRVNDILHQLSGTSVYRNLRSKLALENQDIKGMKIIRISKSNNINYDVYVSFIIGEEEYWGVIKNIMNNPDFKSEVFKDFDLYQTKEWVIKTKGLIIKTIKSWLKPEPGMYRLLNDEITCYSTETGKQLKMEKGIEIELIRSHNDK
Ga0114962_100150763	F103254	N/A	MELKPITNQYDYQQAQKYLESIHGVELSKEESNKISILTVLIEEFERKSKPVEEEIITETLIDYVYDLVINASKYEKHGLIERGLKLGEEYGELSAEILKLKGYKRTTEDEGRINYNILLESTDCLIMIFDIMAHMGFTKEQICDMAEKQVNKWLSGIKM*
Ga0114962_100150768	F097351	N/A	MEVIIGRKSDSLIEQGYVYAPYIPVQTSSVISGYSSKNINRKRKINKIFDLGLDIKDEFSPNKSITSRYSTKNINSKYYGTIEIKNTTQI*