Scaffold Ga0114962

Basic Information
Taxon OID	3300009151 Open in IMG/M
Scaffold ID	Ga0114962_10014965 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009151 Open in IMG/M

Scaffold ID

Ga0114962_10014965 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5588
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5588

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004695	Metagenome	427	Y
F041182	Metagenome / Metatranscriptome	160	Y
F103134	Metagenome	101	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_100149651	F041182	N/A	LDIQQKSKIAEKLATFESSRAPIISIEHVQNINKEEEIDADMALEDFMNSLRKV*
Ga0114962_100149654	F103134	GAG	MYGKVISGGKQMSKGLTKGINDKLEGRSADDSRRESVASAVREAFTVRHLSDQTTNNVSKGGKFKTPSVPAKV*
Ga0114962_100149658	F004695	AGGA	MLDKQNLVVESLESPTGNRGITEQTVHEVYVKMVDYLRLTQSKNTFNRFSDYHYLNIPVSNSTEPVRGIDYIHPVVTPGIDYATAIITKCLMPNGKVNFEFERFTENDSDQARQATEMVKYMINSKNDSYQIIRDWAQDALLHKNGIVMISPVREPITQYKEVEGTKDQLRTFETLAGEKGLTAKRQNMRKIDVDLQGAMQEMMSPDEQEAQQESQGDEVSEAIRNNSIYRAKYKLTGYSTNIKIKHVAQHYFVCNPTISTIQDQDFVGFYDPMTIHECKAQFPFVDLEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWIRKDIDGDGEEEIVEACFSGSYILYVKEVDFIPLANMCPKPIVGNFFGYSLGERLVPMQEYATAIRRAEMAFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPSKHIFEFQPMQGNLAYVQSSMDRFDADKMAMIGMTSPSDVMNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLREVIYIMWKTLVQYSDDYNIQQLANHCLQGRPFLDAKSVENFEFIDRKLINIDLALGFMSDENRLTRQQMIIQAQQGFAQSMMQIDPSVPELFVKVRRPFEDTLRVLGVKDVDAYLPTMDEAAKMAKAKSDKPPSPEEQEMKSKVDLNNAKIGETQAKTGLLAAQTKDIAIDDQFTAMAAKAGKLKAVELD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114962_10014965

Overview

Ecosystem & Geography

Associated Families

Sequences