Scaffold Ga0114962_10009370

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10009370
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7300
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F025458	Metagenome / Metatranscriptome	201	Y
F039992	Metagenome / Metatranscriptome	162	N
F060708	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_100093701	F060708	N/A	DKVPRYLKRFQVPARLALVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSQYTPDSIKRATALRRK*
Ga0114962_1000937012	F000635	GAGG	MTLSEIAQFAGEKVGKTDSDTLVFLQKAASLAYRRVWNFAPWRESVTSSTYSVGTNRTITLGTNVETPLSVSYDQSEVDPIDLATIISQDADLLEETRTGTPVLYHFTGRNTSGIAQLDLYPRLATAGTETLRVVEKLKCLTRTNIVVDFPPASTALDDELRLPHVHHVVLALTHADALERERQYAKAQSVVQAANADLAAMASYELSQVGGVKQITPVSLGDLMTEEITAA*
Ga0114962_100093706	F025458	GGA	MKTLHHNLDGTYVFTDTRTIEEAHQENLTRIRDLVTAKITEAGYDEVWQRNAALGVLTKLEVEQGREFIANLRSAYHDYKARLLASTRDEADGIQFNIP*
Ga0114962_100093708	F039992	GGAGG	VSLDEVSDLRDRVANVSERLARMEERQITLISMLERSLSNFGDLSNRVNAIEGLRTKMLLVAGGLGAIISIAWDFVRSKLINGG*