Scaffold Ga0114962_10008642

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10008642
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7638
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002977	Metagenome / Metatranscriptome	516	Y
F011665	Metagenome / Metatranscriptome	288	Y
F026556	Metagenome / Metatranscriptome	197	Y
F033308	Metagenome	177	Y
F070810	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000864214	F011665	N/A	MQNQINTTPITQLIQLIKAAEISQSKEVRITIQQARLLNLALSEMLIKMNQDYESMYNALKASVNPEVVTVQLDGGGFGPPG*
Ga0114962_100086422	F026556	GGAGG	MSTLTGSLLKLSFGIAFIVIAIALGPILGIWALNTLFPALKISLTWETWAAFNILFSGSLIKFGTGK*
Ga0114962_100086424	F070810	AGAAG	VETVDSVYEIRLNWANQDKYWWNEVCADVVEIFGLPGDRFTSHPYDDCMLFRFKSKKDYQLCKILLSDKL*
Ga0114962_100086426	F002977	AGGAG	MRVIQIPAEGIMKTNDWGDSRVYRIACNCGDEDHNHNVWVETDASDVVVTVYTTGKTNWWSKTRWYHIWTLITKGYVDTESTVHLTRQQAFNYAHVLLNAVEDSDKFREENGNSKTTN*
Ga0114962_100086427	F033308	GGA	METAKQLTDELIYRMKTTDLNKFEIKREVGDNWLPQGTVPFDISASKGIATFTVWAESIQDAEHQVSQFLERDDNE*