Scaffold Ga0114962_10008134

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10008134
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7910
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (45.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004517	Metagenome / Metatranscriptome	434	Y
F009319	Metagenome	319	Y
F040482	Metagenome / Metatranscriptome	161	N
F041563	Metagenome	159	Y
F053781	Metagenome	140	Y
F065407	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000813411	F065407	GGAG	MFTFDEQYKQFEEVANRTKQAYEFWYNCVIETLKDLYKTKK*
Ga0114962_1000813417	F004517	N/A	MKHMDRKYPKENAMLREHKETTFEKQQADRIARRKMIANKLKDLDKEVK*
Ga0114962_100081343	F040482	N/A	MSNAYEDYFEIREVFYDTMGKPIGHSKAAIGGEDRLEVDRYIELAKLALDKPIIKFADHENTSKDTEGK*
Ga0114962_100081344	F041563	N/A	MKIQVKILKENKDGSANAEVIFDKAGLEVLVQWGIVGLLTKAVDEYAIRQDEVPFPVPKKKRK*
Ga0114962_100081345	F009319	N/A	MIEALVKPQALDNDTAVIKILQLMGQLTPNDIAYVTNIALRVHQVISPK*
Ga0114962_100081349	F053781	AGGA	MTTLKVTEEFLILRLLCKMYDESLKGANATQMLELSVDIAESAEKLEQLTVDYINGK*